Name: bio.tools
Keywords: Registry, software registry, biological tool, data services registry, services discovery portal, bio.tools

Resource Name

bio.tools

RRID:SCR_014695 RRID Copied

PDF Report How to cite

bio.tools (RRID:SCR_014695)

Copy Citation Copied

Resource Information

URL: https://bio.tools

Proper Citation: bio.tools (RRID:SCR_014695)

Description: Community registry of software tools and data resources for life sciences. Tools and data services registry as community effort to document bioinformatics resources. Registry of software and databases, facilitating researchers from across spectrum of biological and biomedical science. When adding tools to registry, information including URL, contact information, resource function, field its relevant in, and its primary publication are required. Development is supported by ELIXIR - the European Infrastructure for Biological Information.

Resource Type: database, software resource, software repository, catalog, data or information resource

Defining Citation: DOI:10.1186/s13059-019-1772-6, PMID:26538599

Keywords: Registry, software registry, biological tool, data services registry, services discovery portal, bio.tools

Expand All

Funding: European Union Horizon 2020 ELIXIR-EXCELERATE grant 676559; Danish Ministry of Higher Education and Science

Availability: Free, Freely available

Resource Name: bio.tools

Resource ID: SCR_014695

Alternate IDs: biotools:bio.tools

Alternate URLs: https://github.com/bio-tools/biotoolsRegistry/, https://bio.tools/bio.tools

Old URLs: http://bio.tools

License: CC BY 4.0, GPL 3.0

Record Creation Time: 2022-01-29 12:03:21

Record Last Update: 2025-03-25 11:10:42

This resource

lists	FACS
lists	Fusion Analyser
lists	AffyRNADegradation
lists	GUARDD
lists	GEOquery
lists	RNAcontext
lists	Patchwork
lists	SODOCK
lists	MIMOSA
lists	GraBCas
lists	SNAVI
lists	GENIE3
lists	Megraft
lists	MODENT - A Tool For Reconstructing Gene Regulatory Networks
lists	PeptideProphet
lists	Quant
lists	VARiD
lists	ProteinProphet
lists	Flicker
lists	ARACHNE
lists	Micro-Analyzer
lists	riboPicker
lists	dbSTS
lists	POPBAM
lists	flowPeaks
lists	cn.FARMS
lists	Sequence Search and Alignment by Hashing Algorithm
lists	SAMBLASTER
lists	Pindel
lists	Mfuzz
lists	TAPyR
lists	ContEst
lists	PGS
lists	PEPPER
lists	FPSAC
lists	FlipFlop
lists	ProGlycProt
lists	MuTect
lists	TriageTools
lists	BLASR
lists	DSRC
lists	SRMA
lists	Bowtie
lists	StringTie
lists	PhenoFam
lists	SOAP
lists	SplitSeek
lists	MUSCLE
lists	SplicePlot
lists	Illuminator
lists	GimmeMotifs
lists	Skylign
lists	BreakSeq
lists	Barrnap
lists	SLOPE
lists	CUDA-EC
lists	QualiMap
lists	massiR
lists	OmicsOffice for NGS SeqSolve
lists	QUAST
lists	GenomicTools
lists	NGSUtils
lists	TileQC
lists	Sequedex
lists	PARalyzer
lists	BFCounter
lists	TALLYMER
lists	SNPchip
lists	VAAL
lists	ProbRNA
lists	ADMIXTURE
lists	SABER
lists	piCALL
lists	CYCLE
lists	limmaGUI
lists	DEXUS
lists	KAnalyze
lists	BeadDataPackR
lists	wateRmelon
lists	NGSrich
lists	OLIN
lists	fRMA
lists	MACAT
lists	affylmGUI
lists	DictyOGlyc
lists	GlyProt
lists	CisGenome
lists	ToppCluster
lists	AnimalTFDB
lists	oneChannelGUI
lists	YinOYang
lists	Chilibot: Gene and Protein relationships from MEDLINE
lists	asSeq
lists	FARMS
lists	GERMLINE
lists	unifiedWMWqPCR
lists	HAPLOPAINTER
lists	Biocatalogue - The Life Science Web Services Registry
lists	HOMOZYGOSITYMAPPER
lists	MetaBase
lists	PyLOH
lists	InterMine
lists	myExperiment
lists	pRESTO
lists	TANGO
lists	Prediction of Amyloid Structure Aggregation
lists	PhosphoSitePlus: Protein Modification Site
lists	CCAT
lists	BREAKDANCER
lists	FACTA+.
lists	PEDIGRAPH
lists	CQN
lists	CanSNPer
lists	SamSPECTRAL
lists	TEMP
lists	MEME Suite - Motif-based sequence analysis tools
lists	SNPAAMapper
lists	Pecan
lists	InteroPorc
lists	AffyPipe
lists	ADaCGH2
lists	DINDEL
lists	ASPGD
lists	Candida Genome Database
lists	BISC
lists	PurBayes
lists	SNVer
lists	Cake
lists	S-MART
lists	SHORTY
lists	Pathway Commons
lists	TcoF
lists	BEETL-fastq
lists	SBARS
lists	cpnDB: A Chaperonin Database
lists	cisRED: cis-regulatory element
lists	FlyFactorSurvey
lists	pymzML
lists	EchoBASE
lists	Blood Group Antigen Gene Mutation Database
lists	WebGeSTer DB
lists	RUbioSeq
lists	COSMIC - Catalogue Of Somatic Mutations In Cancer
lists	MethylAid
lists	ExomeDepth
lists	ZOOM
lists	Iterative Signature Algorithm
lists	ShotGun
lists	Pathview
lists	T3DB
lists	Autophagy Database
lists	rBiopaxParser
lists	QualitySNPng
lists	CAMERA - Collection of annotation related methods for mass spectrometry data
lists	libCSAM
lists	RopeBWT2
lists	NetPathMiner
lists	BioNumbers
lists	leeHom
lists	tweeDEseq
lists	ProRata
lists	Coding Potential Calculator
lists	CPTRA
lists	MFEprimer
lists	Distant Regulatory Elements
lists	HGNC
lists	GATE
lists	SuperPred: Drug classification and target prediction
lists	hot scan
lists	AltAnalyze - Alternative Splicing Analysis Tool
lists	Primer3Plus
lists	pairheatmap
lists	BioJS
lists	ms lims
lists	Eukaryotic Linear Motif
lists	Proteome Analyst Specialized Subcellular Localization Server
lists	HYDEN
lists	drFAST
lists	GeneFisher
lists	GreenPhylDB
lists	MiST - Microbial Signal Transduction database
lists	Pipeliner
lists	Gene Set Enrichment Analysis
lists	Piano
lists	Weighted Gene Co-expression Network Analysis
lists	FastSNP
lists	Triplex
lists	mrsFAST
lists	GenePattern
lists	NovelSeq
lists	QDNAseq
lists	MutDB
lists	SplicingCompass
lists	deFuse
lists	Database of Interacting Proteins (DIP)
lists	Assembly Based ReAligner
lists	MAGE-TAB
lists	ggbio
lists	miR-PREFeR
lists	NanoStringNorm
lists	MIPgen
lists	HTqPCR
lists	Parseq
lists	T-profiler
lists	Bpipe
lists	jmzTab
lists	L-Measure
lists	Snakemake
lists	PoPoolation
lists	MultiPhen
lists	PheWAS R Package
lists	Quantitative Enrichment of Sequence Tags
lists	ALDEx2
lists	INMEX
lists	InsertionMapper
lists	BSRD
lists	SeWeR - SEquence analysis using WEb Resources
lists	Segway - a way to segment the genome
lists	Stem Cell Discovery Engine
lists	TagDust
lists	Kdetrees
lists	Tree and reticulogram REConstruction
lists	NEWT
lists	DER Finder
lists	BioPig
lists	Selectome: a Database of Positive Selection
lists	Distributed String Mining Framework
lists	PILGRM
lists	Apo and Holo structures DataBase
lists	MLTreeMap
lists	MG-RAST
lists	miRNAKey
lists	SVseq
lists	Small Molecule Pathway Database
lists	Information Hyperlinked Over Proteins
lists	SVMerge
lists	BioSample Database at EBI
lists	MetaPhyler
lists	SOPRA
lists	NCBI BioSystems Database
lists	SLIQ
lists	G-BLASTN
lists	SSPACE
lists	AmphoraNet
lists	NCBI Structure: Cn3D
lists	DELLY
lists	RUM
lists	STING Report
lists	SoyBase
lists	SINA
lists	Strelka
lists	RNA-eXpress
lists	Percolator: Semi-supervised learning for peptide identification from shotgun proteomics datasets
lists	VFS
lists	ShoRAH
lists	READSCAN
lists	ERANGE
lists	GeneTalk
lists	ORMAN
lists	SEECER
lists	Scripture
lists	SPOT - Biological prioritization after a SNP association study
lists	NCBO Annotator
lists	CoPub
lists	SolexaQA
lists	PHAge Search Tool
lists	Knime4Bio
lists	MethPipe
lists	Bis-SNP
lists	GobyWeb
lists	EMAGE Gene Expression Database
lists	FusionMap
lists	Yabi
lists	GSNAP
lists	rQuant
lists	MethylViewer
lists	DistMap
lists	PASS
lists	mrFAST
lists	Kismeth
lists	Stampy
lists	TreQ
lists	FLASH
lists	SAMStat
lists	PRINSEQ
lists	MethylomeDB
lists	SOAPaligner/soap2
lists	TMA Navigator
lists	TRANSFAC
lists	SeqMap
lists	Bambino
lists	MicrobesOnline
lists	DMRforPairs
lists	TIGRFAMS
lists	CLIPZ
lists	SNPsandGO
lists	ToppGene Suite
lists	SeqTrace
lists	GoSurfer
lists	Jellyfish
lists	GoFish
lists	WEGO - Web Gene Ontology Annotation Plot
lists	ngsTools
lists	GraphProt
lists	SerbGO
lists	GoPubMed
lists	ccPDB - Compilation and Creation of datasets from PDB
lists	DOMMINO - Database Of MacroMolecular INteractiOns
lists	SOURCE
lists	DistiLD - Diseases and Traits in LD
lists	PePr
lists	Expression Profiler
lists	eQuilibrator
lists	DiseaseMeth
lists	Dr.VIS - Human Disease-Related Viral Integration Sites
lists	FunTree
lists	DBETH - Database for Bacterial ExoToxins for Humans
lists	BLESS
lists	GWASdb
lists	HFV Database
lists	IndelFR - Indel Flanking Region Database
lists	MIPModDB
lists	Europe PubMed Central
lists	CharProtDB: Characterized Protein Database
lists	IDEAL - Intrinsically Disordered proteins with Extensive Annotations and Literature
lists	MMMDB - Mouse Multiple tissue Metabolome DataBase
lists	ICEberg
lists	VirHostNet: Virus-Host Network
lists	Cascade
lists	Polbase
lists	VIRsiRNAdb
lists	959 Nematode Genomes
lists	OGEE - Online GEne Essentiality database
lists	ProPortal
lists	SNPedia
lists	Newtomics
lists	HotRegion - A Database of Cooperative Hotspots
lists	SitEx
lists	ScerTF
lists	HMM-TM
lists	NRG-CING
lists	PRED-LIPO
lists	InterEvol database
lists	SpliceDisease
lists	RNA CoSSMos
lists	deepSNV
lists	PRED-GPCR
lists	RecountDB
lists	VICUNA
lists	ProRepeat
lists	MouseBook
lists	COEUS
lists	Predictive Networks
lists	PRED-SIGNAL
lists	Flycircuit
lists	COLT-Cancer
lists	ATRHUNTER
lists	GeneTrail
lists	epigenomix
lists	Pseudomonas Genome Database
lists	QCGWAS
lists	TSSer
lists	UMD-BRCA1/ BRCA2 databases
lists	PomBase
lists	Phytozome
lists	OMPdb
lists	GOEAST - Gene Ontology Enrichment Analysis Software Toolkit
lists	MSIsensor
lists	GWAMA
lists	SpliceTrap
lists	ViralZone
lists	waviCGH
lists	MyHits
lists	Decombinator
lists	CAPS Database
lists	ADGO
lists	zfishbook
lists	EagleView
lists	Gene Expression Database
lists	SRAdb
lists	BEDTools
lists	IMGT/GENE-DB
lists	RamiGO
lists	canSAR
lists	IMGT/LIGM-DB
lists	PLEXdb - Plant Expression Database
lists	COHCAP
lists	DARC - Database for Aligned Ribosomal Complexes
lists	Immune Epitope Database and Analysis Resource (IEDB)
lists	AutismKB
lists	RIKEN integrated database of mammals
lists	Myrna
lists	PhenoM - Phenomics of yeast Mutants
lists	BIGpre
lists	HIstome: The Histone Infobase
lists	TriTrypDB
lists	CuticleDB
lists	Midbody, Centrosome and Kinetochore
lists	SCOP: Structural Classification of Proteins
lists	Expression Database in 4D
lists	VIDA
lists	Database of Arabidopsis Transcription Factors
lists	Atlas of Genetics and Cytogenetics in Oncology and Haematology
lists	ESEfinder 3.0
lists	agriGO
lists	Taipan
lists	AgBase
lists	Chromosome 7 Annotation Project
lists	MEROPS
lists	T1DBase
lists	Hyper Cell Line Database
lists	GenoTan
lists	VISTA Browser
lists	lobSTR
lists	Candidate Genes to Inherited Diseases
lists	VISTA Enhancer Browser
lists	Gene Array Analyzer
lists	Network Analysis, Visualization and Graphing TORonto
lists	MuSiC
lists	MfunGD - MIPS Mouse Functional Genome Database
lists	eTBlast
lists	Single Nucleotide Polymorphism Spectral Decomposition (SNPSpD)
lists	FGDP
lists	hiPathDB - human integrated Pathway DB with facile visualization
lists	miRNEST
lists	neXtProt
lists	NetOGlyc
lists	QuasiRecomb
lists	GMAP
lists	iMir
lists	MaCH-Admix
lists	SeqBuster
lists	LegumeIP
lists	DNAtraffic
lists	MicroSNiPer
lists	Pathema
lists	BeeBase
lists	Geneious
lists	MOSCPHASER
lists	SNPinfo Web Server
lists	elastix
lists	MIRA
lists	NEBcutter
lists	CopySeq
lists	CUPSAT
lists	Atlas2
lists	ALLPATHS-LG
lists	Velvet
lists	HomSI
lists	SVDetect
lists	omiRas
lists	HMCan
lists	HapFABIA
lists	WEBLOGO
lists	ZINBA
lists	SICER
lists	kmer-SVM
lists	MAnorm
lists	Pedimap
lists	nucleR
lists	CEQer
lists	MutSig
lists	DIANA-LncBase
lists	MethMarker
lists	PeakRanger
lists	PlnTFDB
lists	CloudBurst
lists	NPS
lists	MutationTaster
lists	ProDesign
lists	OligoArray
lists	ArrayAnalysis.org
lists	PatMaN
lists	SEAL
lists	Asterias
lists	RACE
lists	RobiNA
lists	CANGS
lists	PlantTFcat
lists	LitInspector
lists	HSLPred
lists	PSAR-Align
lists	CancerResource
lists	JiffyNet
lists	ECHO
lists	GPU-Meta-Storms
lists	GenoREAD
lists	TopHat-Fusion
lists	GeneStitch
lists	FABIA
lists	CPFP
lists	MFPaQ
lists	ICPL ESIQuant
lists	easyRNASeq
lists	PREDDIMER
lists	NetCoffee
lists	SlideSort-BPR
lists	miRPlant
lists	AlienTrimmer
lists	PRIDE Converter 2
lists	SNP ratio test
lists	compomics-utilities
lists	Allim
lists	PLEK
lists	ISDTool
lists	OBI-Warp
lists	LocalAli
lists	iceLogo
lists	multiplierz
lists	AMS
lists	NGSmethDB
lists	PoolHap
lists	DNaseR
lists	Btrim
lists	COBRApy
lists	NAIL
lists	CAZy- Carbohydrate Active Enzyme
lists	A5-miseq
lists	ANNOVAR
lists	GENSCAN
lists	PhosphoSiteAnalyzer
lists	MethylCoder
lists	featureCounts
lists	LOCAS
lists	Scalpel
lists	Cell motility
lists	Mouse Genome Database
lists	CloudAligner
lists	HeurAA
lists	GSA-SNP
lists	seqMINER
lists	PolyPhen: Polymorphism Phenotyping
lists	rqubic
lists	PlantNATsDB - Plant Natural Antisense Transcripts DataBase
lists	MitoBreak
lists	Cube-DB
lists	Death Domain database
lists	Telescoper
lists	Crossbow
lists	MToolBox
lists	GENE-counter
lists	BEADS
lists	PLAN2L
lists	INCLUSive
lists	CSAR
lists	ApiDB CryptoDB
lists	MACS
lists	NNcon
lists	KAVIAR
lists	GeneSigDB
lists	psRNATarget
lists	Composition Profiler
lists	MINAS - Metal Ions in Nucleic AcidS
lists	EGSEA
lists	Crystallography and NMR System (CNS)
lists	Morpheus
lists	IUPHAR/BPS Guide to Pharmacology
lists	RAST Server
lists	ProteomicsDB
lists	SPEX2
lists	LTR_Finder
lists	SCRATCH
lists	DSAP
lists	PALEOMIX
lists	Buccaneer
lists	QuantiSNP
lists	ProtTest
lists	MultiQC
lists	GeneWise
lists	DISEASES
lists	Off-Spotter
lists	oligo
lists	3D-footprint
lists	SC3
lists	MS-GF+
lists	TISSUES
lists	TFBS
lists	CHiCAGO
lists	Poretools
lists	Membrane Protein Explorer
lists	FATCAT
lists	Bio-tradis
lists	ALTER
lists	HISAT2
lists	MetaMapR
lists	PhyD3
lists	Exonerate
lists	primers4clades
lists	Fastml
lists	Bamtools
lists	Genesis
lists	DISULFIND
lists	EnrichmentMap
lists	LoRDEC
lists	mentha
lists	IDEPI - IDentify EPItopes
lists	Oufti
lists	FluxModeCalculator
lists	eXpression2Kinases
lists	SMAGEXP
lists	ProCon - PROteomics CONversion
lists	Lifebit Deploit
lists	TRANSIT
lists	Splicing Express
lists	Microscopy Image Browser
lists	SARTools
lists	SPICE
lists	DINIES
lists	OmicsNet
lists	ngsRelate
lists	clusterProfiler
lists	NetworkAnalyst
lists	FRETBursts
lists	Thunder STORM
lists	ANOCVA
lists	ConsensusClusterPlus
lists	CIBERSORT
lists	CCTOP
lists	scran
lists	Rsubread
lists	Heatmapper
lists	BinPacker
lists	Subread
lists	UMI-tools
lists	Goseq
lists	PRSice
lists	ScaffMatch
lists	EMBOSSMatcher
lists	JAMM
lists	CentroidFold
lists	Gigwa
lists	FastProject
lists	GeSeq
lists	ComplexHeatmap
lists	PatchDock
lists	Proovread
lists	trimAl
lists	ExPASy ABCD database
lists	shinyGEO
lists	AmoebaDB
lists	Blood Exposome Database
lists	STRUCTURE
lists	NetPhos
lists	Geneshot
lists	ProtParam Tool
lists	HiC-Pro
lists	HingeProt
lists	Mousebytes
lists	iTOL
lists	ChiCMaxima
lists	SWISS-MODEL
lists	PASTEClassifier
lists	R/qtl2
lists	FlowCal
lists	Signaling Pathways Project
lists	GPS-SUMO
lists	Roary
lists	SpydrPick
lists	ProSA-web
lists	SIGNOR
lists	MaxAlign
lists	REDIportal
lists	EpiModel
lists	Protein Interactions Calculator
lists	rVista
lists	Minimap2
lists	PrognoScan
lists	Batch Web CD-Search Tool
lists	AlgPred
lists	GOnet
lists	GalaxyWEB
lists	GalaxyRefine
lists	Annotree
lists	khmer
lists	E-CRISP
lists	Robetta
lists	D-GENIES
lists	aroma.light
lists	Clustal Omega
lists	DESeq
lists	VICMpred
lists	Ray
lists	Apollo
lists	STAMP
lists	discoSnp
lists	vcflib
lists	IgBLAST
lists	BioPerl
lists	Genome BioInformatics Research Lab - gff2ps
lists	Rainbow
lists	Predictions for Entire Proteomes
lists	Stacks
lists	Clustal W2
lists	RNAhybrid
lists	Primer3
lists	SAMtools/BCFtools
lists	EBSeq
lists	biobambam
lists	DIALIGN
lists	Unipro UGENE
lists	Bowtie 2
lists	Artemis: Genome Browser and Annotation Tool
lists	WHAM
lists	Database of Secondary Structure Assignments
lists	Minia
lists	HTSeq
lists	RAxML
lists	Sickle
lists	Segemehl
lists	Staden Package
lists	Bismark
lists	NCBI BLAST
lists	Vienna RNA
lists	GBrowse
lists	ea-utils
lists	AmpliconNoise
lists	COILS: Prediction of Coiled Coil Regions in Proteins
lists	BitSeq
lists	HilbertVis
lists	VARSCAN
lists	Regulatory Sequence Analysis Tools
lists	CD-HIT
lists	MACH
lists	SOAPsnp
lists	ProbCons
lists	BEAST
lists	Crux tandem mass spectrometry analysis software
lists	Pscan-ChIP
lists	BRIG
lists	tRNAscan-SE
lists	CGView
lists	Circos
lists	FreeBayes
lists	Glimmer
lists	T-Coffee
lists	Oases
lists	LIMMA
lists	cutadapt
lists	SSAKE
lists	edgeR
lists	OpenMS
lists	Flexbar
lists	SIFT
lists	Mauve
lists	Kalign
lists	RSEM
lists	TopHat
lists	DNAcopy
lists	phyloseq
lists	Trinity
lists	AMOS
lists	FastTree
lists	Cufflinks
lists	Prokka
lists	PAML
lists	CummeRbund
lists	GROMACS
lists	minet
lists	Atac
lists	Pilon
lists	GMA
lists	Nanopolish
lists	Krona
lists	SeqPrep
lists	SortMeRNA
lists	THESIAS
lists	tximport
lists	StoatyDive
lists	rCASC
lists	precrec
lists	IMGT-ONTOLOGY
lists	KAT
lists	globaltest
lists	COPASI
lists	CheckM
lists	Blobtools
lists	NiftyPET
lists	SeaView
lists	ASHLAR
lists	KisSplice
lists	metagen
lists	BUSCO
lists	BLINK
lists	bridge
lists	Fcirc
lists	becas
lists	bwtool
lists	TGS-GapCloser
lists	chimerascan
lists	GLUE
lists	mosdepth
lists	dcmqi
lists	SwiftOrtho
lists	andi
lists	metahdep
lists	HaploReg
lists	Jalview
lists	ScanITD
lists	ImaGene
lists	BioNix
lists	qrqc
lists	MeroX
lists	sleuth
lists	imDEV
lists	MiXCR
lists	mlgt
lists	SMARTdenovo
lists	casper
lists	miRDB
lists	shovill
lists	NiftyFit
lists	libmgf
lists	rbsurv
lists	HH-suite
lists	affy
lists	StatAlign
lists	quantsmooth
lists	Fiji
lists	yaqcaffy
lists	Racon
lists	h5vc
lists	seqbias
lists	tensorflow
lists	MGnify
lists	ngs.plot
lists	dyebias
lists	Eoulsan
lists	Cuffdiff
lists	bsseq
lists	VEnCode
lists	OrthoFinder
lists	genomation
lists	SymPy
lists	eTRIKS
lists	ascat
lists	Bridger
lists	GADMA
lists	lumi
lists	PIRATE
lists	Hippocampome.org
lists	HaTSPiL
lists	XL-mHG
lists	VETA
lists	mitopred
lists	ropls
lists	sabre
lists	scanpy
lists	icy
lists	plgem
lists	MethBase
lists	biobakery
lists	minfi
lists	HyPhy
lists	MyGene.info
lists	EpiEstim
lists	NanoSim
lists	fracridge
lists	TDimpute
lists	Pavian
lists	SimVascular
lists	qcmetrics
lists	Laniakea
lists	CRISPRcasIdentifier
lists	BISE
lists	ODAM
lists	MRIcron
lists	smashpp
lists	BSA4Yeast
lists	neuroelectro
lists	RepeatFiller
lists	ShinyLearner
lists	docker4seq
lists	CRISPR-ERA
lists	MAFFT
lists	RepeatScout
lists	Phenoscape
lists	PhenoMeNal
lists	multtest
lists	TransDecoder
lists	les
lists	PlotTwist
lists	CRISPR-P
lists	Telescope
lists	charm
lists	Warp
lists	skewer
lists	Human Neocortical Neurosolver
lists	ggtree
lists	Datanator
lists	genehunter-imprinting
lists	GraphClust2
lists	eisa
lists	scVelo
lists	GEMINI
lists	beadarray
lists	NGSEP
lists	ProP Server
lists	CandiMeth
lists	METAREP
lists	scater
lists	BioBERT
lists	iontree
lists	MetaP
lists	larvalign
lists	UALCAN
lists	VAPPER
lists	halSynteny
lists	EvidenceFinder
lists	bcbio-nextgen
lists	QuickNII
lists	QIIME
lists	phantompeakqualtools
lists	MCScan
lists	pepwheel
lists	PathwayMatcher
lists	vsn
lists	VisR
lists	Galaxy scater
lists	OpenWorm
lists	ffpe
lists	timecourse
lists	Metascape
lists	Bio2BEL
lists	RDXplorer
lists	ActiveDriver
lists	GENCODE
lists	CRISPRdirect
lists	GeneMarkS-T
lists	SPM
lists	Bionitio
lists	ascend
lists	TCW
lists	NanoPipe
lists	NeuroChaT
lists	pheatmap
lists	prank
lists	Online Peri-Event Time Histogram for Open Ephys
lists	kallisto
lists	ggplot2
lists	odMLtables
lists	glycomedb
lists	pickgene
lists	GigaSOM.jl
lists	pvac
lists	EHRtemporalVariability
lists	GemSIM
lists	lapmix
lists	PAFScaff
lists	refgenie
lists	biospytial
lists	EnteroBase
lists	QGIS
lists	CLIP-Explorer
lists	RatMine
lists	NMRProcFlow
lists	cn.mops
lists	SPP
lists	seq-annot
lists	PsyGeNET
lists	PASA
lists	UniCarb-DB
lists	NormqPCR
lists	PhylomeDB
lists	SnpHub
lists	ReadqPCR
lists	circlize
lists	HmtVar
lists	sim4cc
lists	gprege
lists	FusionCatcher
lists	UniCarbKB
lists	clustergrammer
lists	clipcrop
lists	metabnorm
lists	rnaQUAST
lists	VirusMINT
lists	breseq
lists	PerM
lists	SnpEff
lists	DecGPU
lists	e-Driver
lists	NCBI BioProject
lists	Flye
lists	nondetects
lists	PEMer
lists	VCFtools
lists	STAR
lists	fastqz
lists	SAMTOOLS
lists	Neuroscience Information Framework
lists	eProbalign
lists	dbEST
lists	Dali Server
lists	Genomic Ranges
lists	GenomicFeatures
lists	Cistrome
lists	SOAPdenovo
lists	IRanges
lists	BpForms
lists	BcForms
lists	DIANA-mirPath
lists	AthaMap
lists	Ancestrymap
lists	AutoDock
lists	European Genome phenome Archive
lists	GEN3VA
lists	4See
lists	ABNER
lists	Addgene
lists	A Classification of Mobile genetic Elements
lists	ADMIXTOOLS
lists	AETIONOMY
lists	ADMIXMAP
lists	ALCHEMY
lists	Allele Frequencies in Worldwide Populations
lists	ABS: A Database of Annotated Regulatory Binding Sites From Orthologous Promoters
lists	Alta-Cyclic
lists	Alternate splicing gallery
lists	Assisted Model Building with Energy Refinement (AMBER)
lists	ALOHOMORA
lists	AmpliconTagger
lists	Molecular Dynamics Workflow (BioKepler)
lists	ANDES
lists	ALBERT
lists	ape
lists	ArrayPipe
lists	ArrayMiner
lists	Aroma.affymetrix
lists	ASPEX
lists	The Alternatve Splicing Database
lists	ASSOCIATIONVIEWER
lists	Avogadro
lists	AutoAssemblyD
lists	BadMedicine
lists	BamView
lists	BAIT
lists	BatMeth
lists	AutoDock Vina
lists	BARS
lists	BCBtoolkit
lists	Athena
lists	BarraCUDA
lists	betaVAEImputation
lists	BiG-SLiCE
lists	BBSeq
lists	SVM based method for predicting beta hairpin structures in proteins
lists	BioCarta Pathways
lists	BayesEpiModels
lists	BiNGO: A Biological Networks Gene Ontology tool
lists	BeetleBase
lists	BAR
lists	BioConda
lists	Bioinformatics Toolkit
lists	Bionimbus
lists	biomaRt
lists	Bio++
lists	naiveBayesCall
lists	BioSimulations
lists	BioPlex
lists	Biopieces
lists	BRAIN
lists	BLAT
lists	BS Seeker
lists	Breakpointer
lists	Canu
lists	BioSimulators
lists	BRB-ArrayTools
lists	bioSyntax
lists	CATALYST
lists	BOMP: beta-barrel Outer Membrane protein Predictor
lists	bioRxiv
lists	CAT
lists	CCREL
lists	BWA
lists	CASPAR
lists	CARD
lists	CATH: Protein Structure Classification
lists	CATdb: a Complete Arabidopsis Transcriptome database
lists	Cell Image Library (CIL)
lists	CEM
lists	Cancer Genome Anatomy Project
lists	Centrifuge Classifier
lists	Bs-Seeker2
lists	ChimeraSlayer
lists	ChemSpider
lists	BSVF
lists	CiLiQuant
lists	Chipster
lists	CleanEx
lists	CHEBI
lists	cisTEM
lists	CiteFuse
lists	clustLasso
lists	Chromas
lists	ChiRA
lists	CNVer
lists	CITE-seq-Count
lists	CNV-seq
lists	circlncRNAnet
lists	CMap
lists	COGEME Phytopathogenic Fungi and Oomycete EST Database
lists	ClinVar
lists	ChIPMunk
lists	CODEHOP
lists	ClustVis
lists	CoCo
lists	CONTRA
lists	Comparative Metatranscriptomics Workflow
lists	ComiR
lists	CopyDetective
lists	ConDeTri
lists	Clinotator
lists	cortex
lists	ClinTrajAn
lists	CorMut
lists	Coot
lists	CRCView
lists	CUDASW++
lists	CovalentDock Cloud
lists	Chromosome Scale Assembler
lists	CYANA
lists	Datasets2Tools
lists	DBTSS: Database of Transcriptional Start Sites
lists	CoryneRegNet
lists	CSDeconv
lists	CRISPy-web
lists	dbSNP
lists	ΔG prediction server
lists	DGIdb
lists	DANPOS2
lists	CorrDrugTumorMSI
lists	NCBI database of Genotypes and Phenotypes (dbGap)
lists	Dictyostelium discoideum genome database
lists	DIAMOND
lists	DichroWeb
lists	DETONATE
lists	DicomTypeTranslator
lists	DIME
lists	DEXSeq
lists	DisProt - Database of Protein Disorder
lists	D-EE
lists	DAMBE
lists	DiffBind
lists	DiProGB
lists	DOGMA
lists	DSK
lists	ENIGMA
lists	Descriptions of Plant Viruses
lists	DOMINE: Database of Protein Interactions
lists	Dissect
lists	DrivAER
lists	Enrichr
lists	Variant Effect Predictor
lists	EBCall
lists	eDMR
lists	EMAN
lists	Entrez Gene
lists	ensembldb
lists	Ensembl
lists	Epigenomics Workflow on Galaxy and Jupyter
lists	Ensembl Genomes
lists	epitopepredict
lists	DISENTANGLER
lists	EpiDISH R package
lists	ECLIPSE
lists	Experimental Design Assistant
lists	EpiGRAPH
lists	European Variation Archive (EVA)
lists	eQtlBma
lists	Eukaryote Genes
lists	EXOMEPICKS
lists	fineSTRUCTURE
lists	Evex
lists	Evolutionary Couplings Server
lists	Examl
lists	NHLBI Exome Sequencing Project (ESP)
lists	FlowSOM
lists	FireDB
lists	FGENESH
lists	ExpressYourself
lists	fgsea
lists	FINDbase Worldwide
lists	FateID
lists	FluoRender
lists	An Integrated Multiple Structure Visualization and Multiple Sequence Alignment Application
lists	FlexProt: flexible protein alignment
lists	FlyBase
lists	FLOSS
lists	Full-Length cDNA Database
lists	FANTOM DB
lists	FragGeneScan
lists	FuncAssociate: The Gene Set Functionator
lists	FastQC
lists	Genome Database for Rosaceae
lists	Fugu Genome Project
lists	FunRich: Functional Enrichment analysis tool
lists	GASSST
lists	G-Mo.R-Se
lists	GeneCodis
lists	GASV
lists	FusionHunter
lists	Genome Annotation Generator
lists	GeneSeeker
lists	GenePattern Notebook
lists	GeCo3
lists	Gene3D
lists	GeMoMa
lists	GATK
lists	Genome Projector
lists	Genomedata
lists	Gene Expression Atlas
lists	GeneProf
lists	Genome Trax
lists	GENERECON
lists	Genometa
lists	GEDIT
lists	FunCluster
lists	Gibbs Motif Sampler
lists	GEMB
lists	Genome Reviews
lists	GensearchNGS
lists	GEPAT
lists	Genomic Annotation in Livestock for positional candidate LOci
lists	Generic GO Term Finder
lists	GermOnline
lists	VBASE2
lists	GEO2R
lists	GFINDer: Genome Function INtegrated Discoverer
lists	Generic GO Term Mapper
lists	Google
lists	Gene Ontology
lists	Genome Aggregation Database
lists	Gmove
lists	Git
lists	GNUMAP
lists	G protein receptor interaction feature finding instrument
lists	Graph2GO
lists	Gaggle
lists	GoMapMan
lists	Gramene
lists	GTDB-Tk
lists	GO2MSIG
lists	GMcloser
lists	Genovar
lists	Human Gene Mutation Database
lists	H-InvDB
lists	Bioinformatic Harvester IV (beta) at Karlsruhe Institute of Technology
lists	GRASS
lists	HTR
lists	International HapMap Project
lists	HASTE-project
lists	HARSH
lists	HAPLOCLUSTERS
lists	HSSP
lists	Homologous Sequences in Ensembl Animal Genomes
lists	Human Splicing Finder
lists	HPEPDOCK Server
lists	HS-TDT
lists	HubMed
lists	IBIS: Inferred Biomolecular Interactions Server
lists	hyfi: software suite for binding site search
lists	HiCUP
lists	Human Gene Connectome Server
lists	Identifiers.org
lists	HUGE - Human Unidentified Gene-Encoded large proteins
lists	Hybrid-denovo
lists	HINT
lists	HUDSEN
lists	IntEnz- Integrated relational Enzyme database
lists	IMG System
lists	HCLUST
lists	iDASH
lists	HiPipe
lists	IMGT/StatClonotype
lists	I-TASSER
lists	IRESite
lists	IMEx - The International Molecular Exchange Consortium
lists	IMGT/HLA
lists	ImJoy
lists	IMGT HighV-QUEST
lists	IMGT - the international ImMunoGeneTics information system
lists	IsoEM
lists	IPD - Immuno Polymorphism Database
lists	iPiG
lists	IPI
lists	Isaac
lists	Integr8 : Access to complete genomes and proteomes
lists	inGAP
lists	ISFinder
lists	jmzML
lists	Interolog/Regulog Database
lists	IsoLasso
lists	LAST
lists	LOCUSMAP
lists	J-Express
lists	IsaCGH
lists	IMG
lists	lncRNAdb
lists	InterProScan
lists	KGGSeq
lists	LDSELECT
lists	Magic
lists	JGI Genome Portal
lists	lme4
lists	MAP
lists	OntoQuest
lists	Database oDatabase of Predicted Subcellular Localization for Eukaryotic PDB Chainsf Predicted Subcellular Localization for Eukaryotic PDB Chains
lists	MACiE
lists	LitMiner
lists	long-read-tools
lists	LOCATE: subcellular localization database
lists	LTR_FINDER_parallel
lists	Maq
lists	MaizeGDB
lists	Mammalian Gene Collection
lists	Machado
lists	LRPath
lists	MentaLiST
lists	MatrixDB
lists	MARRVEL
lists	MEBS: Multigenomic Entropy-Based Score
lists	Libra
lists	LS-SNP/PDB
lists	mapDamage
lists	Maqview
lists	Mascot
lists	MAKER
lists	MapSplice
lists	MetAMOS
lists	MethylExtract
lists	MBGD - Microbial Genome Database
lists	MB-GAN
lists	MetaCyc
lists	MeQA
lists	MEGAHIT
lists	Metabolomics Workbench
lists	miRBase
lists	Metastats
lists	MBCluster.Seq
lists	metaXplor
lists	lsa_slurm
lists	MeRIP-PF
lists	MendelIHT.jl
lists	proMODMatcher
lists	mirTools
lists	MetaCyto
lists	MMAPPR
lists	MICSA
lists	MIRIAM Resources
lists	MaSuRCA
lists	UEA sRNA Workbench
lists	MetaVelvet
lists	miROrtho: the catalogue of animal microRNA genes
lists	MERMAID
lists	Mspire-Simulator
lists	MULTIMAP
lists	ML Repo
lists	MIP Scaffolder
lists	SCIPION
lists	MPscan
lists	MISA
lists	MobiDB
lists	MutPred
lists	MizBee
lists	MRFSEQ
lists	MultiLoc
lists	MP3 tool
lists	Multi-omics Visualization Platform
lists	NCBI Probe
lists	NeLS
lists	MoDIL
lists	MPDA
lists	Noncoding RNA database
lists	Myriads
lists	MUMmer
lists	Multiple Myeloma survival predictor
lists	mrCaNaVaR
lists	MULTIDISEQ
lists	mzMatch
lists	Mouse Phenome Database (MPD)
lists	NCBI
lists	Ngs backbone
lists	NetMHCpan Server
lists	miRpathDB
lists	NEMBASE
lists	Nucleic Acid Database
lists	NCBI Genome Workbench
lists	NeuroMatic
lists	Ngmlr
lists	nsSNPAnalyzer
lists	Nephele
lists	Online Resource for Community Annotation of Eukaryotes
lists	Omics Data Paper Generator
lists	Necklace
lists	NEST Simulator
lists	Genotyping
lists	NucleoFinder
lists	NGSView
lists	Open Trials
lists	ngLOC
lists	NetNGlyc
lists	nmrML
lists	NURD
lists	ObjTables
lists	Pathway Tools
lists	NeSSM
lists	NanoGalaxy
lists	PartiGeneDB
lists	NOrMAL
lists	Open Babel
lists	OsiriX Medical Imaging Software
lists	PDB Finder
lists	Opera
lists	Pathbase
lists	PEDIGREEQUERY
lists	PAZAR
lists	PDBe - Protein Data Bank in Europe
lists	PanoramaWeb
lists	Oncodrive-fm
lists	parSMURF
lists	Orientations of Proteins in Membranes database
lists	PEDHUNTER
lists	PeakAnalyzer
lists	Illuminating the Druggable Genome
lists	Phenotypes and eXposures Toolkit
lists	PeakSeq
lists	Pairwise Conservation Scores - An Algorithm to Identify Conserved K-mers
lists	PicTar
lists	Pash 3.0
lists	Pedigree-Draw
lists	OLego
lists	Parliament2
lists	Phylogeny.fr
lists	PEDPEEL
lists	Plant Co-expression Annotation Resource
lists	Peakzilla
lists	Pfam
lists	PhaseME
lists	PHI-base
lists	Eddy Lab Software
lists	PhyML
lists	Protein Information Resource
lists	PRADA
lists	PM4NGS
lists	PennSeq
lists	Philius
lists	PeptideAtlas
lists	PHYLIP
lists	PhenoMan
lists	Proteomics Identifications (PRIDE)
lists	pNovo+
lists	ProfCom - Profiling of complex functionality
lists	PIRSF
lists	PubCrawler
lists	PhyloPat
lists	PEMA
lists	Polygenic Pathways
lists	pFind Studio: pLink
lists	ProteomeXchange
lists	PLANTTFDB
lists	PyRosetta
lists	Phospho.ELM
lists	PRICE
lists	PolymiRTS
lists	PLINK/SEQ
lists	PrimerBank
lists	Pyntacle
lists	PubChem
lists	ProSight Lite
lists	PubGene
lists	PRED-TMBB
lists	Preseq
lists	ProtChemSI
lists	R Project for Statistical Computing
lists	RaptorX
lists	QSRA
lists	Protein Prospector
lists	PrimerSeq
lists	R/QTLBIM
lists	Reactome
lists	PyBEL
lists	PS-Plant Framework
lists	RepeatModeler
lists	QuickGO
lists	QmRLFS-finder
lists	RefSeq
lists	The Human Protein Atlas
lists	QGene
lists	PolyPhred
lists	Rampart
lists	ResponseNet
lists	QUMA
lists	QMSIM
lists	RAREMETAL
lists	Relate
lists	ReactomePA
lists	RESID
lists	RADAR-base
lists	Reaper - Demultiplexing trimming and filtering sequencing data
lists	R-SAP
lists	Research-tested Intervention Programs (RTIPs)
lists	RNA FRABASE - RNA FRAgments search engine and dataBASE
lists	Reptile
lists	Rdisop
lists	RNA-SeQC
lists	RNA Virus Database
lists	RESCUE-ESE
lists	REDItools
lists	RegulonDB
lists	SeqExpress
lists	Scansite
lists	RiboTaper
lists	SALT
lists	riborex
lists	REDfly Regulatory Element Database for Drosophilia
lists	rna-stability
lists	RNAplex
lists	rSNP Guide
lists	SVA
lists	RightField
lists	runBioSimulations
lists	SAMMate
lists	SeqtrimNEXT
lists	rSeq
lists	SeqEM
lists	ROMPREV
lists	SeqSaw
lists	SHARCGS
lists	SAFA Footprinting Software
lists	SHELX
lists	sapFinder
lists	QuPath
lists	SIBLINK
lists	Seqtk
lists	SEEK
lists	SMRT View
lists	SKAT
lists	SimRare
lists	SeQuiLa
lists	SGA
lists	SASQUANT
lists	Sherman
lists	SilkDB
lists	FASTSLINK
lists	SASGENE
lists	SILVA
lists	SGD
lists	ShinyGO
lists	SimSeq
lists	SIDER
lists	SMI Services
lists	Sniffles
lists	STEPS
lists	SNP HITLINK
lists	SOAPnuke
lists	SGN
lists	SIBMED
lists	SIMULATE
lists	rnaSPAdes
lists	SpliceMap
lists	SMART
lists	SnoopCGH
lists	SynTView
lists	SIMPED
lists	Supersplat
lists	SnpSift
lists	SISSRs
lists	Sybil
lists	Solas
lists	SNPTEST
lists	SISYPHUS
lists	ASC
lists	SOAPfusion
lists	TAndem Splice Site DataBase
lists	SoupX
lists	StSNP
lists	T-lex
lists	SWEEP
lists	SynergyFinder
lists	topGO
lists	TAPIR: target prediction for plant microRNAs
lists	TDT-PC
lists	TDR Targets Database
lists	SpoTyping
lists	ShortFuse
lists	SWISS-2DPAGE
lists	Spot
lists	TAGS
lists	SYFPEITHI: A Database for MHC Ligands and Peptide Motifs
lists	SUMSTAT
lists	TMAJ
lists	TASSEL
lists	TreeDyn
lists	TropGENE DB
lists	TB PORTALS
lists	SwissTree
lists	tradeSeq
lists	FLUX CAPACITOR
lists	UNAFold
lists	Transporter Classification Database
lists	ApiDB ToxoDB
lists	Trowel
lists	TopFIND
lists	TRAL
lists	Trim Galore
lists	Biological General Repository for Interaction Datasets (BioGRID)
lists	IQ-TREE
lists	VirusSeq
lists	Tool recommender system in Galaxy
lists	V-Phaser 2
lists	SPIKE
lists	Trans-ABySS
lists	TRiCoLOR
lists	TomoMiner
lists	variancePartition
lists	TRACESPipe
lists	UTRdb/UTRsite
lists	UniParc
lists	TWOLOC
lists	USeq
lists	Zebrafish Information Network (ZFIN)
lists	XPN
lists	TransmiR
lists	Webproanalyst
lists	UTGB Toolkit
lists	VAAST
lists	VirusHunter
lists	Yeast Search for Transcriptional Regulators And Consensus Tracking
lists	zUMIs
lists	VaDiR
lists	WSsas - Web Service for the SAS tool
lists	VFDB - Virulence Factors of Bacterial Pathogens
lists	Gene Index Project
lists	Vector Alignment Search Tool
lists	Vmatch
lists	WEIGHTED FDR
lists	Xenbase
lists	xia2 pipeline
lists	YASARA
lists	Visualization and Analysis of Networks containing Experimental Data (VANTED)
lists	VisSR
lists	dbEST
lists	DESeq2
lists	DNA DataBank of Japan (DDBJ)
lists	FASTX-Toolkit
lists	Trimmomatic
lists	VIPERdb
lists	PhenStat
lists	ABySS
lists	Integrative Genomics Viewer
lists	Human Disease Ontology
lists	LINKAGE
lists	ConSurf Database
lists	Protein Information Resource
lists	PredictNLS
lists	tRNAscan-SE
lists	VeryFastTree
lists	RSEM
lists	Emboss Water
is listed by	Debian
is listed by	ELIXIR Tools and Data Services Registry
is affiliated with	ELIXIR Tools and Data Services Registry
is related to	ms-utils.org
is related to	SUP

Usage and Citation Metrics

We found {{ ctrl2.mentions.total_count }} mentions in open access literature.

We have not found any literature mentions for this resource.

We are searching literature mentions for this resource.

View full usage report

Most recent articles:

{{ mention._source.dc.creators[0].familyName }} {{ mention._source.dc.creators[0].initials }}, et al. ({{ mention._source.dc.publicationYear }}) {{ mention._source.dc.title }} {{ mention._source.dc.publishers[0].name }}, {{ mention._source.dc.publishers[0].volume }}({{ mention._source.dc.publishers[0].issue }}), {{ mention._source.dc.publishers[0].pagination }}. (PMID:{{ mention._id.replace('PMID:', '') }})

Checkfor all resource mentions.

Collaborator Network

A list of researchers who have used the resource and an author search tool

Find mentions based on location

A list of researchers who have used the resource and an author search tool. This is available for resources that have literature mentions.

Ratings and Alerts

Report Information

No rating or validation information has been found for bio.tools.

No alerts have been found for bio.tools.

Data and Source Information

Source: SciCrunch Registry

Find mentions based on location

About

Recent News Entries

Contact Us

SciCrunch

Log in

Resource Report

Find mentions based on location

About

Recent News Entries

Contact Us

SciCrunch