URL: https://github.com/hariszaf/pema
Proper Citation: PEMA (RRID:SCR_017676)
Description: Software as flexible pipeline for environmental DNA metabarcoding analysis of 16S/18S rRNA, ITS and COI marker genes. Performs reads’ pre-processing, clustering to (M)OTUs and taxonomy assignment for 16S rRNA and COI marker gene data. Allows users to explore alternative algorithms for specific steps of pipeline without need of complete re-execution.
Synonyms: Pipeline for Environmental DNA Metabarcoding Analysis
Resource Type: software resource, data analysis software, software toolkit, software application, data processing software
Defining Citation: DOI:10.1101/709113
Keywords: Environmental, DNA, metabarcoding, analysis, ASVs, OTUs, 16S rRNA, COI, ITS, marker, gene, clustering, taxonomy, bio.tools
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