URL: http://pass.cribi.unipd.it/cgi-bin/pass.pl
Proper Citation: PASS (RRID:SCR_005490)
Description: THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 19, 2020.A program to align short sequences that has been developed with an innovative strategy to perform fast gapped and ungapped alignment onto a reference sequence. It supports several data formats and allows the user to modulate very finely the sensitivity of the alignments. The program is designed to handle huge amounts of short reads generated by ILLUMINA, SOLiD and Roche-454 technology. The optimization of the internal data structure and a filter based on precomputed short-word alignments allow the program to skip false positives in the extension phase, thus reducing the execution time without loss of sensitivity. The final alignment is performed by dynamic programming.
Abbreviations: PASS
Synonyms: PASS: a program to align short sequences
Resource Type: software resource
Defining Citation: PMID:19218350
Keywords: bio.tools
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