URL: https://github.com/hillerlab/GenomeAlignmentTools
Proper Citation: RepeatFiller (RRID:SCR_017414)
Description: Software tool to incorporate newly detected repeat overlapping alignments into pairwise alignment chains. It only aligns local genomic regions that are bounded by colinear aligning blocks, as provided in chains, which makes it feasible to consider all seeds including those that overlap repetitive regions. Used to improve genome alignments by incorporating previously undetected local alignments between repetitive sequences.
Resource Type: software resource, image analysis software, software application, alignment software, data processing software
Defining Citation: DOI:10.1101/696922
Keywords: Repeat, overlapping, alignment, pairwise, chain, local, genomic, region, colinear, block, sequence, undetected, bio.tools
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Max Planck Institute of Molecular Cell Biology and Genetics; Dresden; Germany |
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