URL: https://github.com/arq5x/bedtools2
Proper Citation: BEDTools (RRID:SCR_006646)
Description: A powerful toolset for genome arithmetic allowing one to address common genomics tasks such as finding feature overlaps and computing coverage. Bedtools allows one to intersect, merge, count, complement, and shuffle genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF. While each individual tool is designed to do a relatively simple task (e.g., intersect two interval files), quite sophisticated analyses can be conducted by combining multiple bedtools operations on the UNIX command line.
Abbreviations: BEDTools
Synonyms: bedtools - a swiss army knife for genome arithmetic, bedtools: a flexible suite of utilities for comparing genomic features
Resource Type: software resource
Defining Citation: PMID:20110278, DOI:10.1093/bioinformatics/btq033
Keywords: genomics, bed, sam, bam, overlap, sequencing, intersect, coverage, gff, vcf, bedgraph, interval, genome arithmetic, bio.tools
Availability: GNU General Public License, v2, Acknowledgement requested
Resource Name: BEDTools
Resource ID: SCR_006646
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
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