URL: http://www-bionet.sscc.ru/sitex/
Proper Citation: SitEx (RRID:SCR_006122)
Description: THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 19,2019. Analyzing protein structure projection on exon-intron structure of corresponding gene through years led to several fundamental conclusions about structural and functional organization of the protein. According to these results we decided to map the protein functional sites. So we created the database SitEx that keep the information about this mapping and included the BLAST search and 3D similar structure search using PDB3DScan for the polypeptide encoded by one exon, participating in organizing the functional site. This will help: # to study the positions of the functional sites in exon structure; # to make the complex analysis of the protein function; # to exposure the exons that took part in exon shuffling and came from bacterial genomes; # to study the peculiarities of coding the polypeptide structures. Currently, SitEx contains information about 9994 functional sites presented in 2021 proteins described in proteomes of 17 organisms.
Abbreviations: SitEx
Synonyms: SitEx Database
Resource Type: analysis service resource, database, data analysis service, data or information resource, service resource, production service resource
Defining Citation: PMID:22139920
Keywords: projection, protein, functional site, exon, blast, structure, function, gene, amino acid, encoding gene, proteome, ligand, data set, bio.tools
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Institute of Cytology and Genetics of the Siberian Branch of the RAS; Novosibirsk; Russia |
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