URL: http://yost.genetics.utah.edu/software.php
Proper Citation: MMAPPR (RRID:SCR_005092)
Description: A software analysis pipeline for mapping mutations using RNA-seq that works without parental strain information, without the requirement of a pre-existing snp map of the organism, and without erroneous assumptions that recombination occurs at the same frequency across the genome. In addition, it compensates for the considerable amount of noise in RNA-seq datasets and simultaneously identifies the region where the mutation lies and generates a list of putative coding region mutations in the linked genomic segment. MMAPPR can utilize RNA-seq datasets from isolated tissues or whole organisms that are often generated for phenotypic analysis and gene network analysis in novel mutants.
Abbreviations: MMAPPR
Synonyms: Mutation Mapping Analysis Pipeline for Pooled RNA-seq
Resource Type: software resource
Defining Citation: PMID:23299975
Keywords: mutation, rna-seq, bio.tools
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