URL: http://denverlab.science.oregonstate.edu/tileqc/
Proper Citation: TileQC (RRID:SCR_001229)
Description: Out of service. Documented on May,10, 2021.Software providing a visually oriented tile based approach to error detection for Solexa next-gen sequencing data. It is written in R and has both qualitative and quantitative error detection features. This software was written with the idea that the researcher's visual pattern recognition is the best way to detect novel errors and contains variety of ways to visualize that data. Once a new type of error is identified the data extraction features of the program may then be used as a starting point for the programmatic detection and/or filtration of similar errors. A supplementary role of tileQC is to convert the Eland and Q-score data contained within the Solexa "*_prb.txt" and "*_eland_results.txt" text files to a more flexible database form. Once in database form, tileQC simplifies the mechanics of interacting with that data and supplements standard SQL with an expression subsitution mechanism that allows R to be easily comingled with SQL. This system requires access to a mySQL server and the R package RMySQL as well as a few standard UNIX tools (also available on Windows and Macintosh).
Abbreviations: TileQC
Synonyms: TileQC: A tile based approached to quality control
Resource Type: software resource
Defining Citation: PMID:18507856
Keywords: next-generation sequencing, quality control, solexa, r, tile, bio.tools
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