URL: http://phylomedb.bioinfo.cipf.es
Proper Citation: PhylomeDB (RRID:SCR_007850)
Description: Database for phylomes, that is, complete collections of phylogenetic trees for all proteins encoded in a given genome. It aims at providing a repository of high-quality phylogenies and alignments for proteins encoded in model species. To derive a phylome, each protein encoded in a given genome is used as a seed to retrieve its homologs in other complete genomes. These sequences are aligned and processed to derive reliable phylogenies using several phylogenetic methods. Besides providing the evolutionary history of the gene families, phylomeDB includes phylogeny based predictions of orthology and paralogy relationships.
Synonyms: PhylomeDB
Resource Type: data or information resource, database
Defining Citation: PMID:17962297, PMID:21075798, PMID:24275491
Keywords: Genome-wide collections, gene phylogenies, phylogenetic trees collection, proteins encoded, genome, bio.tools, FASEB list
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