URL: http://sourceforge.net/projects/gsa-snp/
Proper Citation: GSA-SNP (RRID:SCR_013109)
Description: A tool for the gene-set (or pathway) analysis of a genome-wide association study result. It accepts a genome-wide list of SNPs and their association P-values. It summarizes the SNP P-values into nearby genes. The gene-by-gene summary results are then further summarized by gene-sets such as Gene Ontology, KEGG pathways, or user-created gene-sets. Various standardization and statistical tests can be performed and the resulting gene-sets that pass a significance level after multiple-testing correction are reported. The tool is written in Java and is available as a standalone version.
Abbreviations: GSA-SNP
Resource Type: software resource, software application, data processing software
Defining Citation: PMID:20501604
Keywords: clinical neuroinformatics, computational neuroscience, imaging genomics, bio.tools
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