URL: http://bowtie-bio.sourceforge.net/myrna/index.shtml
Proper Citation: Myrna (RRID:SCR_006951)
Description: A cloud computing tool for calculating differential gene expression in large RNA-seq datasets. It uses Bowtie for short read alignment and R/Bioconductor for interval calculations, normalization, and statistical testing. These tools are combined in an automatic, parallel pipeline that runs in the cloud (Elastic MapReduce in this case) on a local Hadoop cluster, or on a single computer, exploiting multiple computers and CPUs wherever possible.
Abbreviations: Myrna
Synonyms: Myrna: Cloud-scale differential gene expression for RNA-seq
Resource Type: software resource
Defining Citation: PMID:20701754
Keywords: mapreduce, hadoop, cloud computing, differential expression, gene expression, rna-seq, bio.tools
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ReCount - A multi-experiment resource of analysis-ready RNA-seq gene count datasets |
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