URL: http://qualimap.bioinfo.cipf.es/
Proper Citation: QualiMap (RRID:SCR_001209)
Description: Software application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data. It examines sequencing alignment data in SAM / BAM files according to the features of the mapped reads and provides an overall view of the data that helps to the detect biases in the sequencing and/or mapping of the data and eases decision-making for further analysis.
Abbreviations: QualiMap
Synonyms: QualiMap - Evaluating next generation sequencing alignment data
Resource Type: software resource
Defining Citation: PMID:22914218, DOI:10.1093/bioinformatics/bts503
Keywords: next-generation sequencing, alignment, linux, macos, windows, quality control, sam, bam, bio.tools
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