URL: http://southgreen.fr/content/gigwa
Proper Citation: Gigwa (RRID:SCR_017080)
Description: Web tool to explore genotyping metdata by filtering it on basis of variant features, including functional annotations and matching genotype patterns. May be deployed on workstation or as data portal. Allows to feed MongoDB database with VCF, PLINK or HapMap files and provides interface to filter data in real time. Used to export filtered data into formats and features connectivity with online genomic tools and with standalone software such as FlapJack or IGV. Gigwa hosted datasets are interoperable via two standard REST APIs such GA4GH and BrAPI.
Synonyms: GIGWA, GIGWA2, Genotype Investigator for Genome Wide Analysis
Resource Type: data access protocol, material analysis service, data distribution software, data management software, software application, application programming interface, web service, service resource, biomaterial analysis service, data processing software, software resource, production service resource, analysis service resource, data analysis software
Defining Citation: PMID:27267926
Keywords: metadata, genotyping, filter, variant, functional, annotation, pattern, bio.tools
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