URL: http://research-pub.gene.com/gmap/
Proper Citation: GSNAP (RRID:SCR_005483)
Description: Software to align single and paired end reads as short as 14 nt and of arbitrarily long length. Can detect short and long distance splicing, including interchromosomal splicing, in individual reads, using probabilistic models or database of known splice sites. Permits SNP-tolerant alignment to reference space of all possible combinations of major and minor alleles, and can align reads from bisulfite-treated DNA for study of methylation state.
Abbreviations: GSNAP
Synonyms: Genomic Short-read Nucleotide Alignment Program
Resource Type: alignment software, data processing software, image analysis software, software resource, software application
Defining Citation: PMID:20147302
Keywords: next-generation sequencing, bio.tools, FASEB list
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