Curator Dashboard

FAIROS Research Coordination Network. Mirroring NSF’s “10 Big Ideas” of Convergence Research the Non-Clinical Tomography Users Research Network (NoCTURN) will leverage input from broad community of tomography educators, researchers, and industry stakeholders to propose improvements to data handling that cut across scientific disciplines. Primary goal is to develop practical recommendations that link today’s tomography data with tomorrow’s tomography discoveries.

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• RRID
• 2 years ago - submitted by Anita Bandrowski

An official Digital Object Identifier (DOI) Registration Agency of the International DOI Foundation launched as a cooperative effort among publishers to enable persistent cross-publisher citation linking in online academic journals. The citation-linking network today covers over 65 million journal articles and other content items (books chapters, data, theses, technical reports) from thousands of scholarly and professional publishers around the globe. CrossRef does not aggregate full-text content but rather, it uses a system of distributed aggregation whereby full-text content is linked through a database consisting of minimal publisher metadata. Each record in the database is essentially a triplet: (metadata + URL+DOI). In addition to assigning DOIs to scholarly content, CrossRef has additional services: * Cited-By Linking * CrossRef Metadata Services * CrossCheck plagiarism screening (powered by iThenticate) * CrossMark update identification service * FundRef Funder identification service

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• SciCrunch
• 13 years ago - by Anonymous

Data repository specifically focused on storage and dissemination of omic data generated from BRAIN Initiative and related brain research projects. Data repository and archive for BCDC and BICCN project, among others. NeMO data include genomic regions associated with brain abnormalities and disease, transcription factor binding sites and other regulatory elements, transcription activity, levels of cytosine modification, histone modification profiles and chromatin accessibility.

• SciCrunch
• 9 years ago - submitted by Anita Bandrowski

Core specializes in electrical design, fabrication, and repair of research equipment and instrumentation.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Database with annotations for human variation data with protein structural information and other functionally relevant information, if available. The mutations are organized by gene.

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• SciCrunch
• 17 years ago - by Anonymous

Software that defines a data model for annotated scientific datasets. It includes data together with metadata, and a corresponding file format based on HDF5 for storing and sharing such datasets.

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• SciCrunch
• 9 years ago - submitted by Thomas Wachtler

Software R package for calculating Net Reclassification Improvement for risk prediction models with time to event and binary data. NRI for risk prediction models with time to event and binary response data.

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• RRID
• 2 years ago - by Anonymous

A structured controlled vocabulary of the anatomy of the slime-mould Dictyostelium discoideum.

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• SciCrunch
• 13 years ago - by Anonymous

Software application for visualizing output data from molecular dynamics simulations. It can be customized to read almost any input file format, animate it, and output images of each frame.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Facility provides access to cutting edge instrumentation for high resolution structural analysis of proteins, protein complexes, viruses, macromolecular assemblies, cellular organelles, and bacterial cells., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

An ontology designed to represent the variety of methods used to make qualitative and quantitative clinical and phenotype measurements both in the clinic and with model organisms.

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• SciCrunch
• 13 years ago - by Anonymous

Software for dynamic clamping. It uses National Instruments Boards.

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• RRID-Legacy
• 9 years ago - by Anonymous

Lickometer system based on open-source hardware platform with user-friendly interface software, capable of simultaneously receiving data from eight automated cages with two drinking bottles each. Device to acquire high-quality and detailed data. Adaptable to new types of sensors or other neuroscience tools capable of measuring brain activity simultaneously to the behavior.

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• RRID
• 2 years ago - submitted by Jensen Palmer

SAGA (Substructure Index-based Approximate Graph Alignment) is a tool for querying a biological graph database to retrieve matches between subgraphs of molecular interactions and biological networks. SAGA implements an efficient approximate subgraph matching algorithm that can be used for a variety of biological graph matching problems such as the pathway matching SAGA uses to compare pathways in KEGG and Reactome. You can also use SAGA to find matches in literature databases that have been parsed into semantic graphs. In this use of SAGA, portions of PubMed have been parsed into graphs that have nodes representing gene names. A link is drawn between two genes if they are discussed in the same sentence (indicating there is potential association between the two genes). SAGA lets you match graphs between different databases even though the content is distinct and the databases organize pathways in different ways. This cross-database matching is achieved by SAGA's flexible approximate subgraph matching model that computes graph similarity, and allows for node gaps, node mismatches, and graph structural differences. Comparing pathways from different databases can be a useful precursor to pathway data integration. SAGA is very efficient for querying relatively small graphs, but becomes prohibitory expensive for querying large graphs. Large graph data sets are common in many emerging database applications, and most notably in large-scale scientific applications. To fully exploit the wealth of information encoded in graphs, effective and efficient graph matching tools are critical. Due to the noisy and incomplete nature of real graph datasets, approximate, rather than exact, graph matching is required. Furthermore, many modern applications need to query large graphs, each of which has hundreds to thousands of nodes and edges. TALE is an approximate subgraph matching tool for matching graph queries with a large number of nodes and edges. TALE employs a novel indexing technique that achieves a high pruning power and scales linearly with the database size.

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• SciCrunch
• 17 years ago - by Anonymous

Shared database of multimedia interactions for the study of communication in aphasia.Access to the data in AphasiaBank is password protected and restricted to members of the AphasiaBank consortium group.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Core provides expertise in characterizing proteins from diverse systems. Provides proteomics services including customized sample preparation, protein identification, detection of post-translational modifications, isotopic label based and label-free quantitation, and intact protein characterization. Equipped with high resolution mass spectrometers with nanoflow liquid chromatography systems or chip-based robots. Core uses software systems such as Mascot, Proteome Discoverer, Byonic, and MaxQuant for analysis of raw mass spectrometry data. Provides assistance in protein quantitation and deeper downstream bioinformatics analysis including gene ontology, visualization of protein networks, and pathway analysis. Consultations are always welcome.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Project facilitating the establishment and maintenance of standards systems and infrastructure for the worldwide collection and sharing of all genetic variations effecting human disease. The Human Variome Project produces two categories of recommendations: HVP Standards and HVP Guidelines. HVP Standards are those systems, procedures and technologies that the Human Variome Project Consortium has determined should be used by the community. These carry more weight than the less prescriptive HVP Guidelines, which cover those systems, procedures and technologies that the Human Variome Project Consortium has determined would be beneficial for the community to adopt. HVP Standards and Guidelines are central to supporting the work of the Human Variome Project Consortium and cover a wide range of fields and disciplines, from ethics to nomenclature, data transfer protocols to collection protocols from clinics. They can be thought of as both technical manuals and scientific documents, and while the impact of HVP Standards and Guidelines differ, they are both generated in a similar fashion. A document has been generated both as a guide for those collecting and distributing data and for those developing policy. Items should include those generated by HGVS/HVP collaborators as well as those generated by groups of individual Societies and Standards bodies in all relevant fields worldwide.

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• SciCrunch
• 15 years ago - by Anonymous

Software application to perform systematic and collaborative curation of neuroscientific literature. Graphical User Interface (GUI) for the Python package NeuroAnnotation Toolbox (NAT). Used for the systematic annotation of relevant statements and model parameters to be traceable, reusable across projects, structured with controlled vocabularies.

• SciCrunch
• 9 years ago - submitted by Anita Bandrowski

Provides instrumentation for proteomics and metabolomics studies, including protein, peptide and metabolite separations, MS instrumentation for protein, peptide and metabolite analysis, and data systems, software, and bioinformatics tools for data archiving and analysis. Proteomics Core performs routine analytical proteomics services, including target discovery, identification and quantitation, and also provides platforms for functional proteomics using variety of strategies for protein separation, sub-proteome enrichment, post-translational modification analysis, and quantitation.

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• SciCrunch
• 14 years ago - by Anonymous

Database for molecular interaction information integrated with various other bio-entity information, including pathways, diseases, gene ontology (GO) terms, species and molecular types. The information is obtained from several manually curated databases and automatic extraction from literature. There are protein-protein interaction, gene/protein regulation and protein-small molecule interaction information stored in the database. The interaction information is linked with relevant GO terms, pathway, disease and species names. Interactions are also linked to the PubMed IDs of the corresponding abstracts the interactions were obtained from. Manually curated molecular interaction information was obtained from BioGRID, IntAct, NCBI Gene, and STITCH database. Pathway related information was obtained from KEGG database, Pathway Interaction database and Reactome. Disease information was obtained from PharmGKB and KEGG database. Gene ontology terms and related information was obtained from Gene Ontology database and GOA database.

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• SciCrunch
• 13 years ago - by Anonymous