Curator Dashboard

A research consortium with the long term goal of developing and testing measurement tools to describe symptoms of lower urinary tract dysfunction (LUTD) in women and men. The group plans to study targeted populations of patients with LUTD in order to expand our understanding of the causes of symptoms and common ways that symptoms change over time. The researchers will also collect biosamples from patients for current and future study of LUTD.

• Resource
• dkNET
• 11 years ago - submitted by Ko-Wei Lin

Software provides an interface to the ACEDB object-oriented database. Both read and write access is provided, and ACE objects are returned as similarly-structured Perl objects. Multiple databases can be opened simultaneously.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package to detect different methylation levels (DMR) that gives the exact p-value and q-value of MeDIP-seq and MRE-seq data for different samples comparison.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

A database of experimentally-validate transcription factor binding sites (TFBS) in the Bacteria domain. CollecTF places special emphasis on providing a curation process that captures the experimental support for sites as reported by authors in peer-reviewed publications. Reported binding sites are mapped to NCBI RefSeq complete genome records. The database can be browsed by transcription factor families, NCBI taxonomy or experimental support, or through customized searches integrating these three elements.

• Resource
• SciCrunch
• 11 years ago - submitted by Kristen Jensen

Relational database schema that underlies many GMOD installations. It is capable of representing many of the general classes of data frequently encountered in modern biology such as sequence, sequence comparisons, phenotypes, genotypes, ontologies, publications, and phylogeny. It has been designed to handle complex representations of biological knowledge and should be considered one of the most sophisticated relational schemas currently available in molecular biology. The price of this capability is that the new user must spend some time becoming familiar with its fundamentals.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package using the GASSCO method for correcting for slide-dependent gene-specific dye bias.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

A toolkit for mapping brain entropy using fMRI. It uses several functions from ASLtbx. At its core, the toolkit is a collection of batch scripts that implement a pipeline for processing fMRI data in order to get Sample entropy for each voxel.

• Resource
• RRID-Legacy
• 11 years ago - submitted by Maryann Martone

SIMD Smith-Waterman C/C++ library for use in genomic applications. SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the instruction level. SSW library provides an API that can be flexibly used by programs written in C, C++ and other languages.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package for Data Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Identity-by-descent (IBD) association testing software for genome-wide association study analysis. It requires an IBD detection method such as Beagle FastIBD to run first. GraphIBD then builds upon the IBD information to test if the IBD segments show association to the traits.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Software tool for analysis of genome alignments. It parses and manipulates MAF files as well as more simple fasta files. Despite various filtering options and format conversion tools, MafFilter can compute a wide range of statistics including phylogenetic trees, nucleotide diversity, inferrence of selection, etc.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

A regression based software package to find genes for which there are significant gene expression profile differences between experimental groups in time course microarray experiments.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Diabetes Research Centers (DRC) is an integrated program of diabetes, endocrinology and metabolism research.

• Resource
• SciCrunch
• 11 years ago - submitted by Kristen Jensen

Software tool for single locus species delimitation. Implements fast method to compute the ML delimitation from inferred phylogenetic tree of the samples.Used to handle very large biodiversity datasets.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

THIS RESOURCE IS NO LONGER IN SERVICE, confirmed by curator 11/21/2018; Community of researchers attempting to build a comprehensive virtual cell model. The 3DVC will do for cell biology what the Large Hadron Collider (LHC) does for particle physics, but through a virtual rather than physical resource. It will bring together collaborators around a shared infrastructure to advance the field through efficient groundbreaking science and technology, the results of which will be broadly disseminated to an audience ranging from K12 to professionals. The 3DVC is committed to open science, yet strives for sustainability through new business models that leverages that open content.

• Resource
• SciCrunch
• 14 years ago - by Anonymous

An organization which supports those with rare diseases and those researching rare diseases.

• Resource
• SciCrunch
• 11 years ago - submitted by Kristen Jensen

Software tool as tree drawing program to draw any phylogenetic tree expressed in Newick phylogenetic tree format (e.g., the format used by the PHYLIP package).Used for rooting the unrooted trees obtained from parsimony, distance or maximum likelihood tree-building methods.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth