Curator Dashboard

Software R suite of functions for computing various Bayes factors for simple designs, including contingency tables, one- and two-sample designs, one-way designs, general ANOVA designs, and linear regression.

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• RRID
• 1 year ago - by Anonymous

A database of experimental behavioral data from > 170 aphasia patients who exhibited language impairments secondary to chronic left hemisphere stroke. The core of the database is individual-trial performance data from picture naming. Picture naming is a primary test of lexical processing. The task taps a critical juncture in the language system because naming mediates between high-level conceptual and syntactic processing and low-level phonological processing. Difficulty in this task is present to varying degrees in nearly all aphasic individuals. This site allows researchers to search through naming data from over 170 patients. Searches can narrow in on data subsets based on patient characteristics (e.g. time since aphasia onset, clinical diagnosis), stimulus characteristics (e.g. semantic category, lexical frequency) and task performance (e.g. error type). The data available on this site can be used to test hypotheses about naming impairment and aphasic impairment generally. Once the basic analysis tools of the site are exhausted, users can export the raw data for further analysis and visualization. The web database represents years of data collection. Most were recruited to the research program at Moss Rehabilitation Research Institute (MRRI).

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• SciCrunch
• 14 years ago - by Anonymous

Portal for human electrophysiological data, supports, sharing and in depth analysis of identified human neuroelectromagnetic brain data including scalp EEG, its magnetic counterpart, MEG, and, intracranial iEEG and ECoG. Open access EEG and MEG data archives, analysis, and visualization. Neuroelectromagnetic data, tools, and compute resource.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Private Ivy League research university in Hanover, New Hampshire, United States. Established in 1769 by Eleazar Wheelock, Dartmouth is one of the nine colonial colleges chartered before the American Revolution.

• Organization
• SciCrunch
• 17 years ago - submitted by Timothy Tsui

A social visualization repository for the scientific workflow management system VisTrails providing a platform for sharing and executing computational tasks. It adopts the model used by social Web sites and that integrates a set of usable tools and a scalable infrastructure to provide an environment for scientists to collaboratively analyze and visualize data. crowdLabs aims to foster collaboration but was specifically designed to support the needs of computational scientists, including the ability to access high-performance computers and manipulate large volumes of data. By providing mechanisms that simplify the publishing and use of analysis pipelines, it allows IT personnel and end users to collaboratively construct and refine portals. This lowers the barriers for the use of scientific analyses and enables broader audiences to contribute insights to the scientific exploration process, without the high costs incurred by traditional portals. In addition, it supports a more dynamic environment where new exploratory analyses can be added on-the-fly.

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• SciCrunch
• 17 years ago - by Anonymous

Software package for education and data analysis. Used for scientific data analysis, with functions for data manipulation, plotting, univariate and multivariate statistics, ecological analysis, time series and spatial analysis, morphometrics and stratigraphy.

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• RRID-Legacy
• 6 years ago - by Anonymous

Nonprofit startup which focuses on impactful applications and scientific dissemination, ensuring maximum public benefit without commercial constraints. Forest's state-of-the-art tools, research, and discoveries will be shared with the broader scientific community, aligning with its commitment to open science. Company mission is to advance healthcare by making neurotechnology accessible, less invasive, and adaptable across range of neurological conditions.

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• RRID
• 1 year ago - submitted by Anita Bandrowski

Funding resource that supports research into A-T (Ataxia Telangiectasia) and other debilitating, degenerative diseases plaguing human kind, including cancer and neuro-degeneration associated with auto-immunity and aging. Researchers share their findings and collaborate with each other. The research must lead to practical, near-term treatments and cures to receive funds. The researchers have found treatments and cures that are the first of their kind in the world. Over $850,000 in direct research grants have been made. These grants have leveraged over $9 million in research resources contributed by partner institutions. We pay the research institutions for direct costs only. We pay no administrative, indirect, or overhead costs.

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• SciCrunch
• 14 years ago - by Anonymous

EFurther details are available in Okatan (2018a, 2018b) and Okatan and Kocatürk (2017). Background Extracellular recording of neural activity using microelectrode arrays is widely used in neuroscience research and invasive brain-computer interfaces. For detection of action potentials, or spikes, raw recordings are bandpass filtered and are often thresholded using an amplitude threshold. Computation of an optimal threshold is an active research area. ‘Truncation thresholds’ are a pair of amplitude thresholds that are computed in an entirely automatic and data-driven manner for spike detection in filtered extracellular neural recordings (Okatan and Kocatürk, 2017). The software that computes them, the ‘Truncation Thresholds Software’, is registered with SciCrunch.org under RRID:SCR_014637. Filtered recordings are widely accepted to consist of spikes and background noise. The maximum likelihood estimate of the standard deviation of the background noise is estimated by the Truncation Thresholds Software as a byproduct of the computation of the truncation thresholds. This estimate has been shown to be more accurate than the estimates obtained using seven other methods (Okatan, 2018a, 2018b). This result was demonstrated using simulated extracellular recording data. Here, the simulated data of Okatan (2018a, 2018b) are shared to stimulate further research in the development of new and more accurate estimators of the noise standard deviation. References M. Okatan, M. Kocatürk, (2017), Truncation thresholds: a pair of spike detection thresholds computed using truncated probability distributions . Turkish Journal of Electrical Engineering and Computer Science, 25 (2), 1436-1447. doi:10.3906/elk-1603-33. M. Okatan, (2018a), "Comparison of truncation thresholds with four different robust scale estimators," 26th Signal Processing and Communications Applications Conference (SIU), Izmir, 2018, pp. 1-4, doi: 10.1109/SIU.2018.8404387. M. Okatan, (2018b), "A comparative study on the estimation of noise standard deviation using DATE and truncation thresholds," 2018 26th Signal Processing and Communications Applications Conference (SIU), Izmir, 2018, pp. 1-4, doi: 10.1109/SIU.2018.8404155.

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• NIF
• 6 years ago - submitted by Murat Okatan

University of South Carolina NMR Core.

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• RRID
• 1 year ago - submitted by Savannah Britz

A collection of images of the human nervous system focusing on disease and injury.

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• SciCrunch
• 14 years ago - by Anonymous

Core provides computational analysis for high throughput genomic data, including but not limited to, next generation sequencing data. Our mission is to accelerate scientific discoveries by guiding experimental design, performing robust data quality assessment, and carrying out comprehensive computational analyses. Registration to iLab required.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Software package for visualization of functional enrichment results as network graphs.

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• RRID
• 1 year ago - submitted by Astrid Deschenes

A web server for constructing multilevel gene regulatory networks using ChIP-seq and gene expression data.

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• SciCrunch
• 13 years ago - by Anonymous

Software R package to quantify and interpret divers of variation in multilevel gene expression experiments.Provides statistical and visualization framework for studying drivers of variation in RNA-seq datasets in many types of high throughput genomic assays including RNA-seq gene-, exon- and isoform-level quantification, splicing efficiency, protein quantification, metabolite quantification, metagenomic assays, methylation arrays and epigenomic sequencing assays.

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• RRID-Legacy
• 6 years ago - by Anonymous

NIH-funded project that aims to engage scientists and bioethicists in creating human pangenome reference and resource that represents global human genomic variation. In the process of creating the pangenome, the HPRC is developing improved technology for genome assembly and a next-generation tool ecosystem that leverages the pangenome for comprehensive analyses.

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• RRID
• 1 year ago - by Anonymous

Scientific society whose members conduct basic and clinical pharmacological research in academia, industry and the government developing disease-fighting medicines and therapeutic agents. ASPET publishes five journals: Drug Metabolism and Disposition, Journal of Pharmacology and Experimental Therapeutics, Molecular Pharmacology, Pharmacological Reviews, and Molecular Interventions. ASPET''s membership newsletter is The Pharmacologist. ASPET''s annual meeting is part of Experimental Biology. There are numerous career opportunities in the field of pharmacology available to graduates of advanced training programs. The Society''s web site lists university departments of pharmacology that have established Web sites describing their graduate study programs but it is unlikely that their listing will be complete. ASPET supports nine Divisions, each of which is governed by an Executive Committee. * Division for Behavioral Pharmacology * Division for Cardiovascular Pharmacology * Division for Drug Discovery and Development * Division for Drug Metabolism * Division for Integrative Systems, Translational and Clinical Pharmacology * Division for Molecular Pharmacology * Division for Neuropharmacology * Division for Pharmacology Education * Division for Toxicology

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• SciCrunch
• 14 years ago - by Anonymous

Software tool as suite of tests for identifying dynamic temporal gene regulation using single cell RNA-seq data.Trajectory based differential expression analysis for sequencing data.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software R package to identify, annotate and visualize isoform switches with functional consequences from both short- and long-read RNA-seq data. Analysis of alternative splicing and isoform switches with predicted functional consequences (e.g. gain/loss of protein domains etc.) from quantification of all types of RNASeq by tools such as Kallisto, Salmon, StringTie, Cufflinks/Cuffdiff etc.

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• RRID
• 1 year ago - by Anonymous

Software package to make access to the compilation of metadata from NCBI SRA and tools associated with submission, study, sample, experiment and run much more feasible. This is accomplished by parsing all the NCBI SRA metadata into a SQLite database that can be stored and queried locally. Fulltext search in the package make querying metadata very flexible and powerful. fastq and sra files can be downloaded for doing alignment locally. Beside ftp protocol, the SRAdb has funcitons supporting fastp protocol (ascp from Aspera Connect) for faster downloading large data files over long distance. The SQLite database is updated regularly as new data is added to SRA and can be downloaded at will for the most up-to-date metadata.

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• SciCrunch
• 13 years ago - by Anonymous