Curator Dashboard

An ontology for dengue fever.

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• SciCrunch
• 13 years ago - by Anonymous

Core offers wide variety of services, including access to the Schrodinger platform and high-throughput computing. Services include examining molecular structures and mechanisms in atomic detail and provide graphically rich analysis suitable for inclusion in publications and grants.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Core provides electron microscopy services including Sample preparation from tissues, cell culture, cell suspension; Sample preparation for materials science; Preparation of semi-thin sections; Preparation of ultrathin sections for classical TEM , REM and serial reconstruction;Contrast methods for TEM samples, SEM samples, negative contrast, coating methods for SEM; Classical TEM and REM; Immunogold technique;Tokuyasu freeze-cutting technique; Cryo-substitution; Cryo-electron microscopy; Electron tomography; 3D array tomography; SBF-SEM; Image documentation and digital processing; Technical-preparative adjustments; Provision of infrastructure (sample preparation, electron microscopes, individual user training); Creating image documentation and evaluations; Image processing techniques and quantitative evaluation techniques (Image J, Fiji/TrakEM2, IMOD/3Dmod, Amira 5, ZEN Connect, etc.); Publication consulting.

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• RRID
• 4 months ago - submitted by Sara Timm

Ontology generated from the Flora Malesiana, Flora Gabon, Flora of Central Africa, and a collection of Kew''s African Floras. Every class in the ontology has at least one taxon annotation. This is the pre-classified version of the ontology; the original OWL file is at http://jagannath.pdn.cam.ac.uk/plant/flopo-unclassified.owl

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• SciCrunch
• 13 years ago - by Anonymous

Open source object relational database system that uses and extends SQL language combined with many features that safely store and scale the most complicated data workloads. PostgreSQL runs on all major operating systems.

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• RRID-Legacy
• 6 years ago - by Anonymous

Core provides services including preparation of research tissue specimens for microscopic investigation with imaging capabilities for brighfield and fluorescent microscopy. Offers preparation tissue specimens for Histological sectioning utilizing both frozen and paraffin embedding techniques, preparation of mounted sections on glass slides. Facility maintains microtomes and cryostats for the preparation of tissue sections and houses several high end fluorescent microscopy systems, including the Leica Stellaris 8 tau-STED Super Resolution Microscope, the Nikon A1R+ HD Confocal Microscope,and the Nikon Ti2 HCA Inverted Fluorescence Microscope. Core also provides access to the Spatial Biology Platforms: Akoya PhenoCycler Fusion 2.0, 10x Genomics Visium and 10x Genomics Xenium.

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• RRID
• 4 months ago - submitted by Luke Fritzky

Ontology as a basis for shared semantics and interoperability of simulations, of models, of algorithms and of other resources in this domain. The ontology is based on the Basic Formal Ontology, and adheres to the MIREOT principles.

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• SciCrunch
• 13 years ago - by Anonymous

Provides electronic design services and medical device development including Embedded systems (Firmware, Hardware, and Software solutions), Electronic prototype design services,PLM (Product Life-cycle Management) for electronic design. Supports Product Management from concept to final customer deployment. Expertise to make electronic device complete consumer product that can be deployed for mass production,Sustaining and maintenance engineering for electronic products,Consulting services in the areas of CE/FCC compliance, EMI, and ESD for lab products and certain consumer electronics,Troubleshooting and repair of released electronic systems.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software Python package and command-line tool for merging, comparing, and translating genome-scale metabolic models.

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• RRID
• 4 months ago - by Anonymous

Ontology to (i) Provide better account of and better access to medical information through natural languages in order to help physicians in their daily practice, and to (ii) Enhance European cooperation by multilingual access to standardised medical nomenclatures. The major achievements of MENELAS are the realization of its two functional systems: (i) The Document Indexing System encodes free text PDSs into both an internal representation (a set of Conceptual Graphs) and international nomenclature codes (ICD-9-CM). Instances of the Document Indexing System have been realised for French, English and Dutch ; (ii) The Consultation System allows users to access the information contained in PDSs previously indexed by the Document Indexing System. The test domain for the project was coronary diseases. The existing prototype shows promising results for information retrieval from natural language PDSs and for automatically encoding PDSs into an existing classification such as ICD-9-CM. A set of components, tools, knowledge bases and methods has also been produced by the project. These include language-independent ontology and models for the domain of coronary diseases; conceptual description of the relevant ICD-9-CM codes. This ontology includes a top-ontology, a top-domain ontology and a domain ontology (Coronay diseases surgery). The menelas-top ontology here is the part of the whole ontology without any reference to medical domain.

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• SciCrunch
• 13 years ago - by Anonymous

Software R package to infer copy number variation from single-cell RNA-seq data.

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• RRID-Legacy
• 5 years ago - by Anonymous

Software tool to combine purrr’s family of mapping functions with future’s parallel processing capabilities.

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• RRID
• 3 months ago - by Anonymous

Ontology that aims at representing classes and relations to a specific set of diseases which persist in exactly the physical, psychosocial and economic situation of the poorest, most marginalized populations of the developing world, the Neglected Tropical Diseases (NTD). The current focus of NTDO is related to the transmission of vector-borne diseases and how they are related to the death. NTDO is based on BioTop (main classes and relations) and GFO (Time Representation) and represented in Description Logics (DL). NTDO includes information about the proper disease, its causative agent (when available), dispositions, and the geographic location the disease happens. In addition, NTDO includes a generic attempt to identify the process which leads a person to death, due to NTDs or other diseases. NTDO was built with a rich set of axioms and the intended usage is related to Health Surveillance of NTD-related morbidity and mortality cases.

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• SciCrunch
• 13 years ago - by Anonymous

Software Python toolbox for large scale calcium imaging data analysis and behavioral analysis.Used for motion correction, source extraction, spike deconvolution, and component registration across multiple days. It is suitable for both two-photon and one-photon fluorescence microscopy data, and can be run in both batch and online modes. Contains some routines for analysis of behavior from video cameras.

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• RRID-Legacy
• 5 years ago - submitted by Anita Bandrowski

Core provides bioanalytical and pharmacokinetic support for the research groups and associated clinical trials within the institute, creating a bridge between the laboratory and clinic. Offers services performing bioanalysis using mass spectrometry, quantify therapeutic drugs as well as small molecule cancer related metabolites (targeted metabolomics), analysis of samples from matrices including plasma, blood, tissues, tumours, and cells.

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• RRID
• 3 months ago - submitted by Nadia Cross

Ontology for representing data mining investigations. Its goal is to allow the representation of knowledge discovery processes and be general enough to represent the data mining investigations. The ontology is based on the CRISP-DM process methodology.

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• SciCrunch
• 13 years ago - by Anonymous

MRI and NMR magnetic resonance imaging facility for animal and human research, providing MRI methodologies and expertise for in vivo studies Laboratory space includes biochemical, electronic and surgical suites, and fully equipped machine shop with (2) 3D printers. MRI Core facility has two MRI systems and EEG MRI-compatible system.3T Siemens PRISMA-Fit scanner equipped with True 2 Channel Tx and 64 Channel Rx. The latest RF coil set including a 64 Channel head coil and software packages with full clinical capability.7T Biospec 70/20 as small animal imaging system (Bruker Biospin, Ettlingen, Germany). Latest Hardware and Software. Avance NEO with Paravision 360. Full sensory fMRI stimulation systems:SenSaVue System for visual and auditory stimulation (Invivo Corp, FL, USA), which includes an LCD visual display, audio system, button response unit and software (E-Prime) for paradigm creation, patient management, protocol planning, precise delivery of brain stimulation, and behavioral analysis.ETT Olfactometer with full-programmable 6 independent channels for odor and trigeminal stimulation (ETT, LLC, Hershey, PA).Olfact Smell Test System (Osmic Enterprises, Inc., Cincinnati, OH) is a computerized instrument to test the smell functions of human subjects. The smell functions that can be tested are odor threshold, odor identification, and odor memory.ETT Gustatometer with full-programmable 7 independent channels for taste stimulation (ETT,LLC, Hershey, PA) Eye Link 1000 Plus system via SR Research: The EyeLink 1000 Plus Host PC performs real-time eye tracking at 250, 500,1000, or 2000 samples per second while computing true gaze position on the display viewed by the participant. The Host PC also performs on-line detection and analysis of eye-motion events such as saccades, blinks, and fixations. In addition to the sample data, these events are stored in a data file on the Host PC. They can be sent through the Ethernet link to the Display PC with a minimal delay or output as analog signals (if the optional analog/digital I/O card is installed). From the Host PC, the operator performs participant setup, monitors their performance, and can communicate with applications running on a Display PC.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Facility develops and characterizes clinically annotated patient-derived organoid and stromal cell models to support translational cancer research. Provides standardized model generation, comprehensive validation, experimental services, and investigator training to accelerate precision oncology studies

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• SciCrunch
• 3 months ago - submitted by Edyta Vieth

Ontology of a system for tracking grants and producing reports - Users can access grant data through a query interface and a variety of pre-defined forms and reports.

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• SciCrunch
• 13 years ago - by Anonymous

Open source software tool as file archiver with high compression ratio.

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• RRID-Legacy
• 5 years ago - by Anonymous