Curator Dashboard

Brain connectivity atlas to create systematic, digital repository for data on connections between different cortical areas, in primate species. Data repository for connections between different cortical areas in marmoset monkeys. Allows access to data set and enables other interpretations of data, in light of future evolution of knowledge about marmoset cortex.

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• RRID-Legacy
• 9 years ago - submitted by Piotr Majka

Database of Mass Spectrometry contaminants and pipeline for Affinity Purification coupled with Mass Spectrometry analysis. Contaminant repository for affinity purification mass spectrometry data. Database of standardized negative controls. Used to identify protein-protein interactions.

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• RRID
• 2 years ago - by Anonymous

A Java based software tool designed to simplify and expedite the process of haplotype analysis by providing a common interface to several tasks relating to such analyses. Haploview currently allows users to examine block structures, generate haplotypes in these blocks, run association tests, and save the data in a number of formats. All functionalities are highly customizable. (entry from Genetic Analysis Software) * LD & haplotype block analysis * haplotype population frequency estimation * single SNP and haplotype association tests * permutation testing for association significance * implementation of Paul de Bakker's Tagger tag SNP selection algorithm. * automatic download of phased genotype data from HapMap * visualization and plotting of PLINK whole genome association results including advanced filtering options Haploview is fully compatible with data dumps from the HapMap project and the Perlegen Genotype Browser. It can analyze thousands of SNPs (tens of thousands in command line mode) in thousands of individuals. Note: Haploview is currently on a development and support freeze. The team is currently looking at a variety of options in order to provide support for the software. Haploview is an open source project hosted by SourceForge. The source can be downloaded at the SourceForge project site.

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• SciCrunch
• 17 years ago - by Anonymous

Software for an alternative basecaller for DNA base calling in the portable Oxford Nanopore MinION sequencing device, based on deep recurrent neural networks. Used to improve base calling accuracy and reduce sequencing error rate.

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• SciCrunch
• 9 years ago - submitted by Isabella Froman

Software Mendelian randomization R package. Encodes several methods for performing Mendelian randomization analyses with summarized data.

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• RRID
• 2 years ago - by Anonymous

Central online repository for microRNA nomenclature, sequence data, annotation and target prediction.Collection of published miRNA sequences and annotation.

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• SciCrunch
• 17 years ago - by Anonymous

Software toolkit of Matlab functions for analyzing and visualizing large numbers of t-tests performed on event-related potential data. The toolbox supports within-subject and between-subject t-tests with false discovery rate controls and control of the family-wise error rate via permutation tests.

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• RRID-Legacy
• 9 years ago - by Anonymous

Core for understanding Earth surface processes in bedrock, soil, water, and sediment. Interactions between cosmic rays and Earth’s upper atmosphere create unique isotopes both in the atmosphere and in materials on Earth’s surface. By assessing the ratios and/or concentrations of these isotopes, we can get a deeper insight into the exposure age, soil production rate, catchment-averaged erosion, and processes of Earth’s varied landscapes.

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• RRID
• 2 years ago - submitted by Edyta Vieth

Funder Registry and associated funding metadata allows everyone to have transparency into research funding and its outcomes. Open registry of persistent identifiers for grant-giving organizations around the world.

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• SciCrunch
• 13 years ago - by Anonymous

Project whose goal is to provide Data Environments to the biomedical community. The Data Biosphere works to create a user experience around key modular components — each having discrete capabilities and clear rules of interaction, and each served by multiple alternative implementations.

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• RRID-Legacy
• 9 years ago - submitted by Anita Bandrowski

A command line tool and a library and for fetching reads from remote BLOW5 files.

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• RRID
• 2 years ago - submitted by Bonson Wong

A structured controlled vocabulary for the phenotypes of Ascomycete fungi.

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• SciCrunch
• 13 years ago - by Anonymous

Consortium that is an independent research initiative of the Human Research Information Network (HIRN). It is using human tissues to discover highly specific biomarkers of beta cell injury in asymptomatic T1D and developing strategies to stop beta cell destruction early in the disease process.

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• dkNET
• 9 years ago - submitted by Ko-Wei Lin

Core provides technical support and expertise to enable measurement based care and compute focused research. Service consists of computing platform, composed of redundant high-capacity storage system, along with compute cluster and workstations, tied together with unified single-sign-on user and group management. Platform has facilities for capturing form-based, interactive testing-based and arbitrary binary (imaging etc.) data. Allows clinical researchers to track the trajectories of participating patients across Douglas clinics.

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• RRID
• 2 years ago - submitted by Edyta Vieth

Software package that provides a simple and flexible way to generate Circos 2D track plot images for genomic data visualization. The types of plots include: heatmap, histogram, lines, scatterplot, tiles and plot items for further decorations include connector, link (lines and ribbons), and text (gene) label. All functions require only R graphics package that comes with R base installation.

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• SciCrunch
• 12 years ago - by Anonymous

Singularity Hub is an open source, free to use registry for Singularity containers. It hosts over 1000 container collections and is available at https://www.singularity-hub.org.

• SciCrunch
• 9 years ago - submitted by Vanessa Sochat

Cell Imaging Core Laboratory at John G. Rangos Sr. Research Center offers cell imaging by confocal microscopy, including live cell as well as laser capture microdissection and LCM.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Software package for the analysis of Ct values from high throughput quantitative real-time PCR (qPCR) assays across multiple conditions or replicates. The input data can be from spatially-defined formats such ABI TaqMan Low Density Arrays or OpenArray; LightCycler from Roche Applied Science; the CFX plates from Bio-Rad Laboratories; conventional 96- or 384-well plates; or microfluidic devices such as the Dynamic Arrays from Fluidigm Corporation. HTqPCR handles data loading, quality assessment, normalization, visualization and parametric or non-parametric testing for statistical significance in Ct values between features (e.g. genes, microRNAs).

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• SciCrunch
• 13 years ago - by Anonymous

Database of events about articles that is run by CrossRef. It allows users to view social media mentions, news publication references, annotations, and more.

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• RRID-Legacy
• 9 years ago - submitted by Anita Bandrowski

Encrypted time-series database using homomorphic encryption-based access control. End-to-end encrypted time-series data store where storage server does not see any data in the clear. The time-series streams are encrypted on the client-side, and only authorized parties can decrypt and verify queries.Used to support both scalable computation over encrypted time series data and fine-grained cryptographic access control on queries.

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• RRID
• 2 years ago - submitted by Edyta Vieth