Curator Dashboard

Ontology of the international classification of primary care (ICPC). Denmark: World Organisation of Family Doctors, 1993.

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• SciCrunch
• 13 years ago - by Anonymous

Core light microscopy facility located on main campus of Clemson University. Offers access to multiple Leica Microsystems instruments, including SP8X LIGHTNING confocal with STED,SPE confocal, DMi8 widefield/TIRF/GSD system,THUNDER model organism imager, LMD6500, M125 stereoscope, and DM750P polarized light microscope.We also house Olympus LEXT OLS4100 optical profiler, GE InCell 2500HS high content screener, and Biorad S3e cell sorter. Offers assistance with equipment selection, image analysis, and sample preparation. Offers prepared slides for 4 color fluorescence imaging and can also prepare custom slides.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Software R package to generate balancing weights for causal effect estimation in observational studies with binary, multi-category, or continuous point or longitudinal treatments by easing and extending the functionality of several R packages and providing in-house estimation methods. Used for propensity score weighting.

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• RRID
• 4 months ago - by Anonymous

A structured controlled vocabulary of the anatomy of Amphibians. Note that AAO is currently being integrated into Uberon.

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• SciCrunch
• 13 years ago - by Anonymous

Developed for Allen Reference Atlas and follows terminology from Brain Maps: Structure for the Rat Brain (Swanson, 2004, 2018). The ontology has been subsequently extended and revised to also serve as structure ontology for Allen Mouse Common Coordinate Framework.Defines hierarchical partonomy of anatomical structures of adult mouse brain. At top level, brain is divided into gray matter, fiber tracts and ventricular systems. Gray matter is subdivided into cerebrum, brain stem, and cerebellum, which are themselves organized into subregions in hierarchical tree.

• Resource
• RRID-Legacy
• 6 years ago - submitted by Lydia Ng

High-resolution Nuclear Magnetic Resonance (NMR) spectrometer. Operating at 14.1 Tesla, it features an ultrashielded magnet for superior stray-field reduction and spatial efficiency. It is widely used for advanced structural analysis of small molecules, proteins, and macromolecules. Console: Avance III HD; Magnet: Ultrashield; Field Strength: 600 MHz; Software:TopSpin 3.8 on Alma 9.4; Probes:5mm Triple-resonance Inverse (TXI) cryoprobe with Z-Gradients.

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• SciCrunch
• 4 months ago - submitted by Edyta Vieth

A structured controlled vocabulary of the development of Drosophila melanogaster.

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• SciCrunch
• 13 years ago - by Anonymous

Open source software tool as multiple choice microscopy pipeline for multiplexed whole slide imaging and tissue microarrays. Scalable, modular image processing pipeline for multiplexed tissue imaging. Used for performing sequential steps needed to transform large, multi channel whole slide images into single cell data.

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• RRID-Legacy
• 6 years ago - submitted by Jia-Ren Lin

Core provides range of assays for human and animal hormones, peptides, and metabolites related to metabolic disorders.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

An extension of the Gene Ontology.

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• SciCrunch
• 13 years ago - by Anonymous

Software R package for analysis of short sequenced reads. Framework for small RNA analysis in R using Sequence Based Counts.Can be applied on any type of data generated by large scale nucleotide sequencing, where user wish to maintain sequence integrity during whole analysis.

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• RRID-Legacy
• 5 years ago - submitted by Daniel Nätt

Software package installer for Python. You can use pip to install packages from the Python Package Index and other indexes.

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• RRID
• 4 months ago - by Anonymous

Ontologies designed as a set of interoperable ontologies that will together provide coverage of the infectious disease domain. At the core of the set is a general Infectious Disease Ontology (IDO-Core) of entities relevant to both biomedical and clinical aspects of most infectious diseases. Sub-domain specific extensions of IDO-Core complete the set providing ontology coverage of entities relevant to specific pathogens or diseases. Please note: The ontology metrics displayed by BioPortal do not distinguish IDO-developed terms from terms imported from other ontologies.

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• SciCrunch
• 13 years ago - by Anonymous

Offers microscopy imaging services to both internal and external users in the greater Boston area. The facility is equipped for live cell imaging, laser scanning confocal and super resolution microscopy. Common sample types imaged in the facility are live and fixed bacteria, biofilms, embedded soft tissue, cleared tissue, and mineralized tissue and samples can be labelled or label free. One area of expertise is imaging many fluorophores simultaneously using spectral imaging and linear unmixing. In addition to instrument training, we can also provide advice for sample preparation and image analysis. In some cases, we are able to provide full-service imaging for customers.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Software tool to infer and map cell-to-cell communication networks using single-cell RNA sequencing (scRNA-seq) or proteomics data. Used for inference of intercellular networks from single-cell transcriptomics.

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• RRID
• 3 months ago - by Anonymous

Structured controlled vocabulary for describing meta information of microbial calture collection maintained in biological research centers

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• SciCrunch
• 13 years ago - by Anonymous

Facility offers multicolor cell analysis by BD LSRII cell analyzer and single cell sorting by BD Biosciences FACS Aria cell sorter. Provides user training for self-op use of BD FACS LSRII analyzer 3-laser and Self-op and Assisted sorting on BD FACS Aria IIU 5-lasers.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Proteomics Facility is the centralized service unit of the Medical Faculty of RWTH Aachen University for the analysis of proteome samples. Offers sample preparation and mass spectrometric analysis, as well as bioinformatic processing of raw data (identification and quantification) of peptides and proteins, along with functional bioinformatic analysis of the resulting datasets.

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• RRID
• 3 months ago - by Anonymous

Ontology that contains activities that nurses use while coordinating care among patients.

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• SciCrunch
• 13 years ago - by Anonymous

Core offers micro 3D X-ray imaging of small samples in high resolution and provides images and quantitative analyses of internal structures of ex vivo samples without any destructive procedures.Scanco CT40 system allows for visualization, measurement, and quantification of the structure of mineralized specimens. Contrast reagents permit visualization of soft tissue structures such as blood vessels.System creates 3D model from stack of 2D X-ray images taken around single axis of rotation. High-resolution scanner can capture detail at resolution of 6 to 32 microns. Non- destructive nature of this technology allows investigators to carry out complementary analyses of the same sample. There are two dedicated workstations for analyzing microCT data, the SCANCO analysis software or the Amira software package with XImagePAQ extension.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth