Curator Dashboard

A list of major inbred mouse strains from the Jackson laboratories. This list is not being actively maintained (found on Nov 27, 2013).

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Promotes deeper collaboration across Harvard biomedical research ecosystem.This includes improved capabilities and performance by establishing more transparent and sustainable IT services for our research community.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software package that provides useful classes and functions to handle and analyze targeted bisulfite sequencing (BS) data such as reduced-representation bisulfite sequencing (RRBS) data.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Core provides cytometry services for analysis and sorting of cells as well as expert consultation for experimental design and planning. Offers access to several analytical flow cytometers as well as high speed cell sorting. Training and technical expertise is available.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software for handling and analysis of high-throughput microbiome census data.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Core of University of Ottawa and Ottawa Hospital Research Institute. Provides advice on bioinformatics research design, conduct bioinformatics analysis, and provide support for grant proposals that involve bioinformatics (including conducting pilot studies, support/collaboration letters and methodological text). Areas of expertise include:Analysis of high throughput sequencing data; single cell (Chromium 10x), RNA-seq (including small RNA), ChIP-seq, ATAC-seq, Hi-C.Large scale analysis integrating multiple data types.Helps to arrange for analysis of your biological samples with local core facilities such as StemCore, Proteomics Resource Center, or OHRI Mass Spectrometry Core Facility. Provides yearly training courses in RNA-seq analysis and Bioinformatics analysis using R as well as individual training and analysis support on request.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

ZFIN Protocol Wiki is where zebrafish researchers can share experimental protocols and tips with the rest of the research community. Protocols are organized into sections corresponding to the chapters of The Zebrafish Book, 5th edition (4th edition on-line). Feel free to add new protocols to the appropriate section or add comments to any existing protocol. Sections * General Methods for Zebrafish Care * Breeding * Embryonic and Larval Culture * Imaging * Cellular Methods * Dissociated Cell Culture * Genetic Methods * Antisense Methods * Histological Methods * in situ Hybridization Techniques * Mapping * Transgenesis * Gene Cloning * DNA Analysis * RNA Analysis * Protein Analysis * Microarray * Recipes

• Resource
• SciCrunch
• 16 years ago - by Anonymous

Flow cytometry shared resource laboratory at the University of Pennsylvania. Facility has instruments, which include analyzers, cell sorters, small particle detectors, dual fluorescence cell counter/viability instrument, tissue dissociator for cell preparation. Provides on-site and off-site support to instrument users, including analyzer and cell sorter training. Core's Research and Development team collaborates/consults with principal investigators in developing high-dimensional panels, as well as staining, acquisition, and analysis.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

A catalog of antibodies important for zebrafish research, maintained by ZFIN. ZFIN Antibody Wiki is where zebrafish researchers can help each other by sharing antibody information - new antibodies, protocols, tips - anything that might be helpful.

• Resource
• SciCrunch
• 16 years ago - by Anonymous

Facility provides basic cell culture training and services in various cell culture and related procedures e.g. Mycoplasma and Endotoxin testing. Services include cell culture at various scales, expansion of primary cells, seed cell cultures from on site cell bank, cell storage; large scale growth of hybridoma and other cell lines followed by antibody purification by protein G column or recombinant protein production; EBV induced transformation of lymphocytes.Offers hybridoma generation by cell fusion and screening and, transfection of mammalian cells. Facility prepares specialized cell culture media, Drosophila media and, various tissue culture and molecular biological reagents.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

A database of phylogenetic trees of animal genes. It aims at developing a curated resource that gives reliable information about ortholog and paralog assignments, and evolutionary history of various gene families. TreeFam defines a gene family as a group of genes that evolved after the speciation of single-metazoan animals. It also tries to include outgroup genes like yeast (S. cerevisiae and S. pombe) and plant (A. thaliana) to reveal these distant members.TreeFam is also an ortholog database. Unlike other pairwise alignment based ones, TreeFam infers orthologs by means of gene trees. It fits a gene tree into the universal species tree and finds historical duplications, speciations and losses events. TreeFam uses this information to evaluate tree building, guide manual curation, and infer complex ortholog and paralog relations.The basic elements of TreeFam are gene families that can be divided into two parts: TreeFam-A and TreeFam-B families. TreeFam-B families are automatically created. They might contain errors given complex phylogenies. TreeFam-A families are manually curated from TreeFam-B ones. Family names and node names are assigned at the same time. The ultimate goal of TreeFam is to present a curated resource for all the families. phylogenetic tree, animal, vertebrate, invertebrate, gene, ortholog, paralog, evolutionary history, gene families, single-metazoan animals, outgroup genes like yeast (S. cerevisiae and S. pombe), plant (A. thaliana), historical duplications, speciations, losses, Human, Genome, comparative genomics

• Resource
• SciCrunch
• 17 years ago - by Anonymous

Core works with existing resources to provide targeted study design and biostatistics support to ITMAT/CTSA investigators.Services include protocol review, study design, proposal development, and performance of simple to potentially substantial complex analyses. SDAB integrates support available with HUP and CHOP Center for Human Phenomic Science (CHPSs), expertise and resources of faculty in Center for Clinical Epidemiology and Biostatistics / Department of Biostatistics and Epidemiology (CCEB/DBE), Biostatistics Analysis Center (BAC), and Biostatistics and Data Management Core (BDMC) at CHOP.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software to graphically browse results of clustering and other analyses from Cluster.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Mission is to act as portal for research community into Bio-medical imaging resources of University of Pennsylvania. Goals include creating and maintaining access for research community to Bio-medical imaging technologies, enabling research investigators to benefit from Bio-imaging expertise and experience, and educating researchers about Bio-medical imaging options through targeted seminars, research fellowships, and established training programs.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

A peer-reviewed encyclopedia written by the leading experts in their respective fields. It does not publish research or position papers, but rather living reviews that will be maintained by the future generation of experts via the process of curatorship. :Computational neuroscience, Neuroscience, Electrophysiology, Neuron, Network Dynamics , Brain Models, Synapse, Memory, Conditioning, Consciousness, Vision, Olfaction, Neuroimaging, Dynamical Systems, Oscillators, Synchronization, Pattern Formation, Chaos, Bifurcations, Simulation Environment, Artificial Neural Networks, Models of Neurons, Spiking Networks, Brain Theory, Recurrent Networks, Feedforwar, Networks, Graph Theory, Reinforcement Learning, Evolutionary Computation, Information Theory, Statistics, Signal Analysis, Pattern Recognition, Navigation and Control, Robotics :

• Resource
• SciCrunch
• 17 years ago - by Anonymous

Software tool as adapter that abstracts SingleCellExperiment container in form of tibble and allows data manipulation, plotting and nesting.

• Resource
• RRID
• 4 years ago - by Anonymous

Government agency responsible for the United States Census that also gathers other national demographic and economic data. As a part of the United States Department of Commerce, it serves as a leading source of data about America''''s people and economy. Its most visible role is to perform the official decennial (every 10 years) count of people living in the U.S. The most important result is the reallocation of the number of seats each state is allowed in the House of Representatives, but the results also affect a range of government programs received by each state. The agency director is a political appointee selected by the President of the United States.

• Resource
• SciCrunch
• 13 years ago - submitted by Andrea Stagg

Provides consultation and training in ultra high resolution imaging of cells and tissues in fixed or live states. Provides expertise in quantitative image analysis and consultations on microscopy related research projects.

• Resource
• SciCrunch
• 4 years ago - submitted by Edyta Vieth

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 23, 2019 Database was open, publicly accessible platform for DNA and clinical data related to human Major Histocompatibility Complex (MHC). Data from IHWG workshops were provided as well., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• dkNET
• 17 years ago - by Anonymous

Software tool that calculates distances between BGCs in order to map BGC diversity onto sequence similarity networks, which are then processed for automated reconstruction of Gene Cluster Families, groups of gene clusters that encode biosynthesis of highly similar or identical molecules.

• Resource
• RRID
• 4 years ago - by Anonymous