Curator Dashboard

Software tool for identification of cross-linked peptides from mass spectra. Used for analysis of chemically cross-linked protein complexes. Used to analyze both novel and existing data sets.

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• RRID-Legacy
• 6 years ago - by Anonymous

Core facility that collects and provides specimens and longitudinal clinical data from patients with digestive diseases. Specimens collected and processed by the core currently include blood, surgical resections, endoscopic biopsies, and stool. Clinical information is stored in a database and linked to specimens and data obtained from these specimens.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

An application ontology for the domain of gene expression. The ontology integrates fragments of GO and MI with data from GOA, IntAct, UniProt, NCBI, KEGG and orthology relations.

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• SciCrunch
• 13 years ago - by Anonymous

Software python package for reading Portable Encapsulated Projects or PEPs in python.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software open-source Python library that makes it easy to work with geospatial data. It extends the popular data analysis library, Pandas, by allowing you to perform spatial operations on geometric shapes like points, lines, and polygons.

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• RRID
• 4 months ago - by Anonymous

Ontology generated as part of the Bioinformatics Integration Support Contract (BISC) that is based on the National Library of Medicine (NLM) Medical Subject Headings; National Cancer Institute Thesaurus; International Classification of Diseases, Ninth Revision, Clinical Modification (ICD-9-CM); ICD-10; and other open source public databases. Specific information may be available about a class, including Preferred_Name, DEFINITION, Synonym, etc.

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• SciCrunch
• 13 years ago - by Anonymous

Initiative to develop community, and establish internationally sustained data and model management service to European Systems Biology community. Web accessible repository for storing and sharing data, models, protocols and publications relating to systems biology research projects.Repository for publishing FAIR (Findable, Accessible, Interoperable and Reusable) data, operating procedures and models.Contains data, SOPs models, publications and other research assets from large research programmes and independent projects, including SysMO consortium, ERASyAPP and Digital Salmon. Public service for users to upload and publish research assets.

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• NIF
• 6 years ago - submitted by Maryann Martone

Core offers proteomics, metabolomics, and lipidomics services.Core specialises in working with precious and low-input samples including single-cell proteomics, deep visual proteomics from FFPE tissue, and integrated multiomics from a single sample. Every project is supported from experimental design through to full bioinformatic analysis and biological interpretation.Proteomics: from bulk expression to single-cell and spatial resolution. Metabolomics: precise identification and isotope tracing of metabolic pathways.Lipidomics: high-accuracy profiling of cellular lipid landscapes and signalling. Speciality: Spatial, Single-Cell and Integrated Multiomics: proteins, metabolites and lipids from the same precious sample.

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• SciCrunch
• 4 months ago - submitted by Edyta Vieth

An application ontology for microRNAs.

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• SciCrunch
• 13 years ago - by Anonymous

Core provides resources for imaging model organisms, tissue, cells, biomaterials, and artificial structures and houses equipment including almost every light microscopy imaging modality presently available. Cell culture facilities are also available nearby as well as other routine items necessary for biological imaging and material imaging. This facility has been designated Nikon Centers of Excellence, thus providing unique opportunity for training, demonstration, instrument development, and research.We excel in use of telemicroscopy through use of remote imaging sessions, remote control of all instruments, and remote data analysis sessions available to all users.Provides training to all users that plan to conduct experimentation. Following an initial consultation in which experimental requirements, expected outcomes, and careful scrutiny of feasibility, training and/or access is arranged through the Director.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Core offers research instrumentation for hands-on use to researchers. Provides molecular biology, analytical, and imaging instruments to serve RI’s biomedical scientists totaling 3800 sq. ft. in the URI College of Pharmacy building.

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• RRID
• 4 months ago - submitted by Chris Hemme

Ontology to help the systematic review and meta-analysis process of non randomized clinical trials.

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• SciCrunch
• 13 years ago - by Anonymous

Software Matlab interface for reading and writing Neurodata Without Borders (NWB) 2.0 files.

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• RRID-Legacy
• 6 years ago - submitted by Anita Bandrowski

Database provides age specific reference templates and segmented brain volumes for participants ranging from 2 weeks to 89 years of age. It is highly utilized for pediatric and lifespan neurostructural studies to prevent misspecifications caused by using adult only templates. Consists of average MRI templates, segmented partial volume estimate volumes for GM, WM, T2W-derived CSF. The database is separated into head-based and brain-based averages. The data are separated by ages in months, years, 6-month, or 5-year intervals. The templates are grouped into first year (2 weeks through 12 months), early childhood (15 months through 4 years), childhood (4 years through 10 years), adolescence (10.5 years through 17.5 years) and adults (18 years through 89 years). Tools for cortical source analysis of EEG and ERP are provided. These tools are based on the average MRI templates, segmenting, and atlases.

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• NIF
• 4 months ago - submitted by Albert Crowley

Ontology including the disease names, phenotypes and their classifications involved in Glucose Metabolism Disorder, Diabetes. (OBO and OWL format are available in sourceforge.)

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• SciCrunch
• 13 years ago - by Anonymous

Provides short training courses to in service public health practitioners and professionals.Offers teaching, research, and policy advice in public health in Pakistan.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Core provides services, including sample analysis and cell sorting, as well as instrumentation, software, and technical expertise/advice for a variety of flow cytometric protocols. Training is available to enable users to run the cytometers themselves.

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• RRID
• 3 months ago - by Anonymous

Ontology that expresses the PROV Data Model using the OWL2 Web Ontology Language (OWL2) providing a set of classes, properties, and restrictions that can be used to represent and interchange provenance information generated in different systems and under different contexts. It can also be specialized to create new classes and properties to model provenance information for different applications and domains.

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• SciCrunch
• 13 years ago - by Anonymous

Software tool as ggplot2 extension for alluvial plots. Used to visualize frequency distributions over time or frequency tables involving several categorical variables. Requires user to specify dimensions, either as separate aesthetics or as key-value pairs, relies on separate layers (stats and geoms) to produce strata, alluvia, and alluvial segments called lodes and flows.

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• RRID-Legacy
• 5 years ago - by Anonymous

Browser-based tool to open almost any sequence file — FASTA, FASTQ, GenBank, EMBL, Swiss-Prot, AB1/ABIF, SCF, Clustal, Stockholm, PHYLIP, NEXUS, MSF, PIR and more — see every sequence inside, pick the ones you want, and save them as FASTA. The format is detected from the file content, not from the extension, so unlabelled or misnamed files still open. Runs entirely in the browser — files are never uploaded.

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• RRID
• 3 months ago - submitted by Fishka Bio