Curator Dashboard

A basic ontology which describes the proteomics pipeline infrastructure for CPTAC project

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• SciCrunch
• 13 years ago - by Anonymous

Alferov Federal State Budgetary Institution of Higher Education and Science Saint Petersburg National Research Academic University of the Russian Academy of Sciences was founded in 1997 originally as the Research and Education Center of the Ioffe Institute to integrate science and education in the field of physics and information technologies.

• Organization
• SciCrunch
• 15 years ago - submitted by Andrea Stagg

Collection of mutations in CFTR gene for international cystic fibrosis genetics research community. Provides up to date information about individual mutations in CFTR gene. All known CFTR mutations and sequence variants have been converted to standard nomenclature recommended by Human Genome Variation Society. On line process for submission of new mutations has been added.While they continue to ensure quality of data, they urge international community to give them feedback and suggestions. Clinical information in this database relates only to details of discovery of specific mutations. As part of 2010 upgrade, CFTR1 joined new project called CFTR2 - Clinical and Functional TRanslation of CFTR. Links to CFTR2 for many mutations in CFTR1 will provide up-to-date summaries of genotype-phenotype information from patient registries around the world.

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• SciCrunch
• 17 years ago - by Anonymous

Database that represents a centralized platform to visually depict and integrate information pertaining to domain architecture, post-translational modifications, interaction networks and disease association for each protein in the human proteome. All the information in HPRD has been manually extracted from the literature by expert biologists who read, interpret and analyze the published data.

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• SciCrunch
• 17 years ago - by Anonymous

Public research university in Adelaide, South Australia. It is known for its focus on research and emphasis on moving towards commercialization of research.

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• SciCrunch
• 17 years ago - submitted by Stephen Larson

Curated collection of human metabolite and human metabolism data which contains records for endogenous metabolites, with each metabolite entry containing detailed chemical, physical, biochemical, concentration, and disease information. This is further supplemented with thousands of NMR and MS spectra collected on purified reference metabolites.

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• SciCrunch
• 14 years ago - by Anonymous

Integrative database of germ-line V genes from the immunoglobulin loci of human and mouse. It presents V gene sequences extracted from the EMBL nucleotide sequence database and Ensembl together with links to the respective source sequences. Based on the properties of the source sequences, V genes are classified into 3 different classes: * Class 1: genomic and rearranged evidence * Class 2: genomic evidence only * Class 3: rearranged evidence only This allows careful sequence quality validation by the user. References to other immunological databases ( KABAT, IMGT/LIGM and VBASE ) are given to provide all public annotation data for each V gene. The VBASE2 database can be accessed either by the Direct Query interface or by the DNAPLOT Query interface. The Sequences given by the user are aligned with DNAPLOT against the VBASE2 database. Direct Query allows to enter sequence IDs and names (Field 1), choose species, locus, V gene family and class (Field 2) or search for 100% sequences (Field 3). At the DNAPLOT Query, the sequences given by the user are aligned with DNAPLOT against the VBASE2 database. The DNAPLOT program offers V gene nucleotide sequence alignment referring to the IMGT V gene unique numbering. The Quick Search can be used either for Direct Query to search for sequence IDs and V gene names or for DNAPLOT Query for up to 5 sequences. The new Fab Analysis allows you to align Fab, scFab, scAb or scFv sequences with DNAPLOT against the VBASE2 database, where both heavy and light chain are analyzed.

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• SciCrunch
• 16 years ago - by Anonymous

Public university in Antwerp, Belgium that offers programs in economics, engineering, arts, design sciences, and medicine and health.

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• SciCrunch
• 13 years ago - submitted by Timothy Tsui

Core services range from simple protein identification to quantification of proteins (relative and absolute) through bottom-up proteomics analyses. Offers intact, native, and top-down proteomics analyses. Provides comprehensive global quantitative analysis of post-translational modifications (PTMs) such as phosphorylation, ubiquitination, acetylation, and methylation, as well as epiproteomics histone PTM assays.

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• RRID
• 1 year ago - submitted by Brianna Krusen

Database containing the DNA sequence and annotation of the entire human chromosome 7, encompassing nearly 158 million nucleotides of DNA and 1917 gene structures, are presented; the most up to date collation of sequence, gene, and other annotations from all databases (eg. Celera published, NCBI, Ensembl, RIKEN, UCSC) as well as unpublished data. To generate a higher order description, additional structural features such as imprinted genes, fragile sites, and segmental duplications were integrated at the level of the DNA sequence with medical genetic data, including 440 chromosome rearrangement breakpoints associated with disease. The objective of this project is to generate a comprehensive description of human chromosome 7 to facilitate biological discovery, disease gene research and medical genetic applications. There are over 360 disease-associated genes or loci on chromosome 7. A major challenge ahead will be to represent chromosome alterations, variants, and polymorphisms and their related phenotypes (or lack thereof), in an accessible way. In addition to being a primary data source, this site serves as a weighing station for testing community ideas and information to produce highly curated data to be submitted to other databases such as NCBI, Ensembl, and UCSC. Therefore, any useful data submitted will be curated and shown in this database. All Chromosome 7 genomic clones (cosmids, BACs, YACs) listed in GBrowser and in other data tables are freely distributed.

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• SciCrunch
• 14 years ago - by Anonymous

Public research university located in Cape Town in the Western Cape province of South Africa. UCT was founded in 1829 as the South African College making it the oldest higher education institute in South Africa.

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• SciCrunch
• 13 years ago - submitted by Andrea Stagg

Software functions for normalization of two-color microarrays by optimised local regression and for detection of artifacts in microarray data.

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• SciCrunch
• 13 years ago - by Anonymous

Bone Marrow Donors Worldwide (BMDW) is the continuing effort to collect the HLA phenotypes of volunteer stem cell donors and cord blood units, and is responsible for the co-ordination of their worldwide distribution. Participants are 63 stem cell donor registries from 44 countries, and 43 cord blood banks from 25 countries. The current number of donors and cord blood units in the BMDW database is: 14,605,618 (14,178,976 donors and 426,642 CBU''s The original goal to collect the HLA phenotypes of volunteer stem cell donors and cord blood units, and to co-ordinate their world-wide distribution remain their primary goals. But new initiatives have been added: - To maximise the chance of finding a stem cell donor or cord blood unit by providing access to all stem cell donors and cord blood units available in the world. - To minimise the effort required for stem cell donor or cord blood unit searches: only registries with potential stem cell donors or cord blood units need to be contacted. - To provide an estimate of the chance of finding a stem cell donor or cord blood unit for a given patient. - To provide advanced search programs to identify partially matched stem cell donors or cord blood units. - To facilitate search advice requests via the Internet. - To facilitate improvements in family search strategies. - To provide relevant general information for the benefit of the patient. - To provide statistics on the increase of different registries, the number of DNA typed donors, etc. Sponsors: Bone Marrow Donors Worldwide is an initiative of the Immunobiology Working Party of the European Group of Blood and Marrow Transplantation (EBMT) in 1988. Keyworss: Bone marrow, Donor, Cell, Phenotype, Stem cell, Cord blood unit,

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• SciCrunch
• 17 years ago - by Anonymous

Academic life at the University of Denver provides enriching intellectual and cultural experiences that will help you sharpen your mind, explore your values and deepen your commitments. Known for its excellence in undergraduate and graduate research and academics, DU offers more than 200 challenging programs, including traditional bachelor''s, master''s and doctorate degrees, innovative dual degrees, and online degrees and certificates for working professionals. With DU''s outstanding student-to-faculty ratio (10:1 in undergraduate courses and 12:1 overall), you will have the unique opportunity to forge collaborative, meaningful partnerships with internationally recognized faculty. These inspiring relationships stimulate intellectual and personal discovery-and inform your life''s direction. 61 percent of DU students study and live abroad for at least one quarter. A fundamental part of academic life, study abroad helps you develop cross-cultural connections-and the new perspectives that come with them-so that you can understand and appreciate the interdependencies that characterize our world.

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• SciCrunch
• 13 years ago - submitted by Eddy Kim

A 3' snRNA-seq dataset of the granular retrosplenial cortex (RSG) of mice and rats. Housed at the Neuroscience Multi-omic (NeMO) archive.

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• RRID
• 1 year ago - submitted by Isla Brooks

Software package dedicated to the handling of molecular marker data for multivariate analysis. This package is related to ADE4, a R package for multivariate analysis, graphics, phylogeny and spatial analysis. (entry from Genetic Analysis Software)

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• SciCrunch
• 14 years ago - by Anonymous

Public research university in Reykjavík, Iceland and the country's oldest and largest institution of higher education.

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• SciCrunch
• 15 years ago - submitted by Andrea Stagg

Reporting to the Division of Information Technology, and working in close partnership with the Office of Research, works with researchers to improve their project performance and secure computing resources not only at the university level but beyond, to National Labs and other high profile HPC resources.

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• RRID
• 1 year ago - submitted by David Reddy

HubMed provides an interface to PubMed. Quick access to searches with a Firefox search plugin or a HubMed bookmarklet (drag to your browser''s bookmarks toolbar). Export citations in RIS, BibTeX, RDF and MODS formats, or directly to RefWorks. Unzip HubMed''s import filter into Endnote''s Filters folder for direct import into Endnote, or install the RIS Export plugin for direct import into ProCite, RefMan and older versions of Endnote. Use the Citation Finder to convert reference lists from PDFs into search results. Create lists of closely related papers using Rank Relations, then visualise and browse clusters of related papers using TouchGraph (requires Java). Graph occurrences of keywords in published papers over time. Tag and store annotated metadata for articles of interest.

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• SciCrunch
• 17 years ago - by Anonymous

Public research university in Lafayette, Louisiana. It has the largest enrollment within the nine-campus University of Louisiana System and the second largest enrollment in Louisiana.

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• SciCrunch
• 12 years ago - submitted by Stephen Larson