Curator Dashboard

A fold change ranks ordering statistics based software for detecting differentially expressed genes.

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• SciCrunch
• 13 years ago - by Anonymous

Software tool for macromolecular structure visualization. Molecular visualization framework to visualize crystallographic models of macromolecules. Used to visualize and create publication quality images of macromolecular structures with user friendly interfaces.

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• RRID-Legacy
• 6 years ago - by Anonymous

Facility supports flow cytometry, cell sorting, and mass cytometry across the University of Birmingham (UoB). Based in the College of Medicine and Health. Also supports instruments at Queen Elizabeth Hospital, Institute of Translational Medicine (ITM), and College of Life and Environmental Sciences. Services range from user training on self-service instruments to expert-supported cell sorting and GCP-compliant mass cytometry in dedicated ITM labs.

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• SciCrunch
• 1 year ago - submitted by Edyta Vieth

Open-source scientific workflow and provenance management system that provides support for simulations, data exploration and visualization. It was designed to manage these rapidly-evolving workflows. VisTrails has a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the workflows that derive these products and their executions. This information is persisted as XML files or in a relational database, and it allows users to navigate workflow versions in an intuitive way, to undo changes but not lose any results, to visually compare different workflows and their results, and to examine the actions that led to a result. It also enables a series operations and user interfaces that simplify workflow design and use, including the ability to create and refine workflows by analogy and to query workflows by example. VisTrails supports the creation and execution of workflows. It allows the combination of loosely-coupled resources, specialized libraries, grid and Web services. The released version comes with support for several packages including, VTK, Image Magick, Web Services, and pylab. You can also download packages contributed by users, as well as create your own packages/modules. Workflows can be run interactively, through the VisTrails GUI, or in batch using a VisTrails server. VisTrails is written in Python and it uses the multi-platform Qt library for its user interface. It runs on Mac, Linux and Windows. Provenance-rich results derived by VisTrails can be included in LaTeX, Wiki, Microsoft Word and PowerPoint documents.

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• SciCrunch
• 17 years ago - by Anonymous

Software tool as information driven flexible docking approach for modeling of biomolecular complexes.User friendly integrative modeling of biomolecular complexes.HADDOCK v 2.2 offers new features such as support for mixed molecule types, additional experimental restraints and improved protocols, all of this in user friendly interface.

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• RRID-Legacy
• 6 years ago - by Anonymous

Software R package used in survival analysis that evaluates predictive accuracy of survival model. Measures how well model can distinguish between pairs of individuals with different survival times. Calculates proportion of all pairs of individuals whose predicted survival times are correctly ordered.

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• RRID
• 1 year ago - by Anonymous

One of only four NCRR-supported centers with the capability to conduct biomedical research in the chimpanzee, it offers chimpanzee-derived cell lines, antibodies and other biological materials, along with a registry of biologic reagents that are known to work in the chimpanzee. The Resource and Management Core is responsible for providing animal resources, tissues/biological fluids, cell lines, expert advice and research support to NIH extramural and intramural programs, other federal agencies and private sponsors. The Resource-Related Research Core conducts research to improve the health of the animals maintained, with special emphasis on studies that will enhance the usefulness of the chimpanzee as a model for studies of human disease. Resource-related research will focus on characterization of the immune system of the chimpanzee, expansion of our understanding of chimpanzee cardiomyopathy as a potential human disease model and comparisons of the physiologic and immunological consequences of research manipulations on chimpanzees trained to voluntarily cooperate with research procedures. By expanding the resources available, conducting resource-related research and containing costs, the CBRR will continue to provide a critically important, highly specialized research resource to address important human health issues.

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• SciCrunch
• 14 years ago - by Anonymous

Software tool for phylogenetic analysis under parsimony as well as extensive tree handling and diagnosis capabilities.

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• RRID-Legacy
• 6 years ago - by Anonymous

Advanced high-field NMR facility combines many capabilities spanning solution and solid state NMR, high sensitivity cryoprobes, ultrafast spinning MAS probes, as well as Dynamic Nuclear Polarization.

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• RRID
• 1 year ago - by Anonymous

Plugins can extend WordPress to do almost anything you can imagine. In the directory you can find, download, rate, and comment on all the best plugins the WordPress community has to offer. Search for res-comms for Beyond the pdf related plugins. WordPress can host your plugin and give it some exposure. You'll be able to: # Keep track of how many people have downloaded it. # Let people leave comments about your plugin. # Get your plugin rated against all the other cool WordPress plugins. # Give your plugin lots of exposure in this centralized repository.

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• SciCrunch
• 17 years ago - by Anonymous

Provides service and training in proteomics and mass spectrometry. Services in proteomics, differential proteomics, two dimensional difference gel electrophoresis, isobaric tags for relative and absolute quantitation, tandem mass tags, iodoTMT, stable isotope labeling with amino acids in cell culture, quantification of proteins by label-free LC-MS/MS, and analysis of protein post translational modifications and molecular weight determination. Core offers education, consultation, data processing and reporting, and support of grant application.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Teaching hospital located in Yeongeon-dong, Jongno-gu, Seoul, South Korea. It is general and teaching hospital of Seoul National University's College of Medicine.

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• RRID
• 1 year ago - by Anonymous

This is a data resource of recordings of spike activity from about 5000 neurons along the auditory pathway from the cochlear nuclei to the neocortex, cerebellum, and elsewhere. There is also an analysis program that averages histograms of spike activity and concurrent electromyographic (EMG) activity obtained from the orbicularis oculi (eyeblink) and levator oris (nose twitch) muscles. No search interface; distribution consists of a collection of Microsoft Office and Windows executable files. Each recording contains the response to a 70 dB click* (produced by applying a 1 ms rectangular pulse to a loudspeaker) before or after conditioning blink responses to the click as a CS. A discriminative acoustic stimulus, a 70 dB hiss DS, was also presented at a time apart from the click. There are guides to the regions from which each recording was made and to the associated behavioral states as well as a tutorial on how to use the analysis program. There is an appendix listing the data format. Sufficient indexes and examples are available here to understand the data. The data can be downloaded (voluminous) or borrowed on CD (5) from the UCLA Biomedical Library and copied. There is also an analysis program that averages histograms of spike activity and concurrent electromyographic (EMG) activity obtained from the orbicularis oculi (eyeblink) and levator oris (nose twitch) muscles. Each recording contains the response to a 70 dB click (produced by applying a 1 ms rectangular pulse to a loudspeaker) before or after conditioning blink responses to the click as a CS. A discriminative acoustic stimulus, a 70 dB hiss DS, was also presented at a time apart from the click. There are guides to the regions from which each recording was made and to the associated behavioral states as well as a tutorial on how to use the analysis program. There is an appendix listing the data format. There is a second appendix (12. Appendix 2) with downloadable, self-executable data files of the complete database. Also available are copies of the original lab notebooks with depths of the recordings. WHAT THE ANALYSIS PROGRAM DOES 1. Averages four groups of specified spike or EMG files. 2. Graphs the current averages as peri-stimulus time histograms (PSTHs). (Check the ppt files.) 3. Adjusts scaling to specification. 4. Prints or copies the graphs to slides. 5. Creates super averages from specified averages or data from many units 6. Graphs, scales, prints and copies super averages 7. Batch processing as yet not ready for use 8. Provides detailed reports of all useful information contained within the current averages raw data files or general information about the super averages 9. Provides error messages concerning the analyses.

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• SciCrunch
• 17 years ago - by Anonymous

Core provides mouse transgenic and cryopreservation services including Sperm cryopreservation, Mouse in vitro fertilization, Mouse Rederivation, Transgenic Mouse Generation,DNA microinjection,CRISPR/Cas9-Mediated Genetically Engineered Mouse Production. Core equipment includes Hamilton Thorne Computer-Aided Sperm Analysis System,Sutter Xenoworks Micromanipulator,Sutter Xenoworks Digital Microinjector,Nikon TE2000 inverted microscope,MINC benchtop incubator,Leica M165 dissecting microscope.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Facility serves as central facility for human organoid technology to accelerate organoid-based scientific discovery. Provides human pluripotent stem cell (hPSC) derived as well as tissue derived cells and organoids.

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• RRID
• 1 year ago - by Anonymous

Software tools for (automated and manual) quality control of the results of Genome Wide Association Studies.

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• SciCrunch
• 13 years ago - by Anonymous

Cell Imaging Centre provides services and training for imaging and analysis of live or fixed cells and tissues.Image acquisition equipment and expert consultation for experimental design related to light and electron microscopy are offered, with full technical assistance, from sample processing through image analysis.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

Florida State University is a public research university in Tallahassee, Florida, United States. It is a senior member of the State University System of Florida and a preeminent university in the state. Chartered in 1851, it is located on Florida's oldest continuous site of higher education.

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• SciCrunch
• 17 years ago - submitted by Stephen Larson

A free program for multiple sequence alignment editing, visualisation and analysis that is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server. Use it to view and edit sequence alignments, analyse them with phylogenetic trees and principal components analysis (PCA) plots and explore molecular structures and annotation. Jalview has built in DNA, RNA and protein sequence and structure visualisation and analysis capabilities. It uses Jmol to view 3D structures, and VARNA to display RNA secondary structure.

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• SciCrunch
• 13 years ago - by Anonymous

Open source mobile health platform for collecting, monitoring, and analyzing data using sensors, wearables, and mobile devices. Enables study design and set up, active and passive remote data collection, secure data transmission via Wifi and/or Bluetooth and scalable solutions for data storage, management and access. Allows study participants to share their health data with clinicians and researchers in secure way.

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• dkNET
• 6 years ago - submitted by Maryann Martone