Curator Dashboard

Central repository that receives, catalogs, preserves, and distributes wild type and mutant cultures of the green alga Chlamydomonas reinhardtii, as well as useful molecular reagents and kits for education and research.

• Resource
• SciCrunch
• 10 years ago - submitted by Kaitlin Sung

Software tool as Intuitive Editor for annotated multiple Sequence and Structure Alignments.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software to visualize electrocorticographic (ECoG) and possibly also other kinds of neural activity (EEG / EMG/ DOT) on a 3D model of the cortical surface. The tool has been used to produce cortical activation images and image sequences in several recent studies using ECoG. The tool is written in matlab. The package is thoroughly documented and includes a demo.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Data repository for statistical information of Latin America and the Caribbean countries collected, systematized and published by CEPAL. CEPALSTAT provides access to statistics and indicators produced by separate ECLAC Divisions which can be used for socio-economic and environmental analysis, as well as various decision-making processes related to Central and South America. Users can export data and cross-tabulate indicators to produce tables combining data from different series, countries and/or periods.

• TCC Resources
• YaleTCC
• 10 years ago - submitted by Luis Marenco

Portable software library for volume rendering.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Open and collaborative platform dedicated to curation of biological pathways. Each pathway has dedicated wiki page, displaying current diagram, description, references, download options, version history, and component gene and protein lists. Database of biological pathways maintained by and for scientific community.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

Software semantic platform for curating and searching figures. Allows to share scientific figures and underlying data in way that is machine readable and findable. Platform for researchers and publishers to make their papers discoverable based on their data content. Used to make scientific papers discoverable based on data content, to enable researchers to find specific data, to test or generate new hypotheses, and to share and connect data. Openly accessible and easily applicable data discovery tool as initiative by EMBO.

• SciCrunch
• 10 years ago - submitted by Anita Bandrowski

Software tool as post-processor for TopHat unmapped reads that restores read information in the proper format.Enables downstream software to process plethora of BAM files written by TopHat.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

A software tool which predicts whether an amino acid substitution or indel has an impact on the biological function of a protein.

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• SciCrunch
• 13 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE, documented on May 12, 2017. Web application for annotation and collaboration on web pages. Its features include the ability to highlight words, comment, and share annotated copies of the web page that can be annotated by other users.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

Gold standard dataset of software mentions in research publications. Provides dataset of annotated software mentions from full text academic literature in biomedicine and economics directly converted from published PDFs with reproducible infrastructure. Includes provenance, and is formatted for immediately usefulness in NLP. Useful for supervised learning at scale.

• Resource
• RRID
• 3 years ago - submitted by Edyta Vieth

Accepts and makes available geochemical, geochronlogical, and petrological data (analytical and synthesis) through this community-driven effort to facilitate the preservation, discovery, access and visualization of data generated. * PetDB holds geochemical data from sub-oceanic igneous and metamorphic rocks generated at mid-ocean ridges including back-arc basins, young seamounts, and old oceanic crust. Data are compiled primarily from the published literature. * SedDB integrates marine and terrestrial sediment geochemical data compiled primarily from the published literature. * Deep Lithosphere Data Set contains geochemical and petrological data from lower crust and upper mantle xenoliths. (more info) * VentDB contains hydrothermal spring geochemistry that hosts and serves the full range of compositional data acquired on seafloor hydrothermal vents from all tectonic settings. * NAVDAT - The Western North American Volcanic and Intrusive Rock Database * Geochron is an application that helps with the onerous task of data management for geochronological and thermochronological studies. * EarthChemPortal is the one-stop-shop for geochemical data that gives users the ability to search federated databases PetDB, NAVDAT, and GEOROC simultaneously, integrated into a common output format. (more info) * The EarthChem Library is a repository for geochemical datasets (analytical data, experimental data, synthesis databases) and other digital resources relevant to the field of geochemistry, contributed by the geochemistry community. * SESAR - System for Earth SAmple Registration

• Resource
• SciCrunch
• 14 years ago - by Anonymous

Core that offers support for data-driven projects related to basic, clinical and translational research, with a particular emphasis on diabetes. The core aims to ensure that researchers take advantage of the most modern and robust methods available in the field of Bioinformatics and Biostatistics.

• Resource
• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Non-profit organisation dedicated to advancing disease, understanding and treatment through cutting-edge models. Provides mouse model resources for modelling human diseases. Provides research infrastructure for generation, phenotyping, archiving, and distribution of mouse models in Europe. Through collaboration with other infrastructures, it fosters global data sharing and contributes to tackling significant health challenges.

• Resource
• RRID
• 3 years ago - submitted by Montse Gustems

Simulation software for modeling the entire human brain by combining structural and functional data from empirical neuroimaging data. It can generate local field potentials, EEG, MEG and fMRI BOLD data based on neural mass models. The user can also modify the model parameters to match clinical conditions from focal lesions or degenerative disorders.

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• SciCrunch
• 14 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 30,2023. Core facility that provide support for diabetes translation research aiming to reduce health disparities and support translation research in the community.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Web based platform that enables data discovery from curated historical and on going oceanographic sequencing efforts. Enables discovery and integration of oceanographic ‘omics, environmental and physiochemical data layers. Used to centralize and standardize contextual data associated with major marine 'omic datasets. Used for marine microbiology to discover and analyze interconnected 'omics and environmental data.

• Resource
• RRID
• 3 years ago - by Anonymous

Consortium represents all publicly available gene trap cell lines, which are available on non-collaborative basis for nominal handling fees. Researchers can search and browse IGTC database for cell lines of interest using accession numbers or IDs, keywords, sequence data, tissue expression profiles and biological pathways, can find trapped genes of interest on IGTC website, and order cell lines for generation of mutant mice through blastocyst injection. Consortium members include: BayGenomics (USA), Centre for Modelling Human Disease (Toronto, Canada), Embryonic Stem Cell Database (University of Manitoba, Canada), Exchangeable Gene Trap Clones (Kumamoto University, Japan), German Gene Trap Consortium provider (Germany), Sanger Institute Gene Trap Resource (Cambridge, UK), Soriano Lab Gene Trap Resource (Mount Sinai School of Medicine, New York, USA), Texas Institute for Genomic Medicine - TIGM (USA), TIGEM-IRBM Gene Trap (Naples, Italy).

• Resource
• SciCrunch
• 17 years ago - by Anonymous

Core that provides CSIBD investigators with the technical support, expertise and access to instrumentation necessary for their morphological and cell biological studies related to IBD. These services include routine tissue fixation and processing for light microscopy, imaging flow cytometry, perfusion-fixation of organs, conventional electron microscopy, low temperature embedding in Lowicryl HM20, and immunocytochemistry.

• Resource
• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Software package annotates genetic variants with their predicted effect on splicing. Used to identify splice variants.

• Resource
• RRID
• 3 years ago - submitted by Quetzally Medina