Curator Dashboard

A structured controlled vocabulary of stage-specific anatomical structures of the human. It has been designed to mesh with the mouse anatomy and incorporates each Carnegie stage of development (CS1-20). The abstract version of the human developmental anatomy ontology compresses all the tissues present over Carnegie stages 1-20 into a single hierarchy. The heart, for example, is present from Carnegie Stage 9 onwards and is thus represented by 12 EHDA IDs (one for each stage). In the abstract mouse, it has a single ID so that the abstract term given as just ''heart'' really means ''heart (CS 9-20)''. Timing details will be added to the abstract version of the ontology in a future release.

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• SciCrunch
• 13 years ago - by Anonymous

Software validation tool for Portable Encapsulated Projects or PEPs in python.

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• RRID-Legacy
• 5 years ago - by Anonymous

Public research university in Uruguay. Based in Montevideo, it is the most important higher education institution in the country. One of the largest public universities in South America in terms of enrollment.

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• RRID
• 3 months ago - submitted by Edyta Vieth

Ontology for immunogenetics and immunoinformatics. Provides semantic specification of terms to be used in immunogenetics and immunoinformatics and manages related knowledge, thus allowing standardization for immunogenetics data from genome, proteome, genetics, two-dimensional (2D) and three-dimensional (3D) structures. Manages the knowledge through diverse facets relying on seven axioms, IDENTIFICATION, CLASSIFICATION, DESCRIPTION, NUMEROTATION, LOCALIZATION, ORIENTATION and OBTENTION. These axioms postulate that any object, any process and any relation can be identified, classified, described, numbered, localized and orientated, and the way it is obtained can be characterized. The axioms constitute the Formal IMGT-ONTOLOGY, also designated as IMGT-Kaleidoscope. As the same axioms can be used to generate concepts for multi-scale level approaches, the Formal IMGT-ONTOLOGY represents a paradigm for system biology ontologies, which need to identify, to classify, to describe, to number, to localize and to orientate objects, processes and relations at the molecule, cell, tissue, organ, organism or population levels. IMGT, the international ImMunoGeneTics information system, has been built on IMGT-ONTOLOGY. The version 1.0.2 of IMGT-ONTOLOGY includes the concepts of IDENTIFICATION and the concepts of CLASSIFICATION.

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• SciCrunch
• 13 years ago - by Anonymous

Phenotypic variation of transcriptomic cell types in mouse motor cortex.Repository contains analysis code and preprocessed data.Data includes exonic and intronic gene counts, extracted electrophysiological features, extracted morphological features and z-profiles. Datasets with recorded at room temperature and recorded at physiological temperature.

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• RRID-Legacy
• 5 years ago - submitted by Anita Bandrowski

Core provides advanced technologies and expert support to study cellular and whole-organism metabolism. The core offers instrumentation for measuring mitochondrial function, metabolic flux, energy expenditure, and metabolite profiling, along with consultation, training, and data acquisition services.

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• RRID
• 3 months ago - by Anonymous

An ontology for metagenome sample metadata that mainly defines predicates.

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• SciCrunch
• 13 years ago - by Anonymous

Offers new cryo-electron microscopy tools available to University researchers, allowing for visualization of three-dimensional structures of molecules and macromolecular complexes in solution.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Core is multi-user and service laboratory that offers comprehensive genetic and genomic services. Provides expert consultation, grant application support, training, and both standard and customized sequencing library preparation. Collaborates on genomics, transcriptomics and epigenomics projects.

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• RRID
• 3 months ago - by Anonymous

Ontology that describes the medical information necessary for early detection of the oral cancer reoccurrence extracted from the NeoMark Project.

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• SciCrunch
• 13 years ago - by Anonymous

of widgets for visualization NWB data in Jupyter notebook. Widgets allow you to navigate through hierarchical structure of NWB file and visualize specific data elements. Designed to work with NWB 2.0 files and to be easy to extend.

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• RRID-Legacy
• 5 years ago - submitted by Anita Bandrowski

A single cell map uses single cell transcriptomics to map hormone production and action across 47 disease-free human tissues at cellular resolution.

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• dkNET
• 2 months ago - submitted by Ko-Wei Lin

Ontology that provides a lightweight representation of the variables used to measure experimental properties and the measurement scales that form the complex data types supporting that data. Many different variables measure the same thing, here they use a lightweight representation driven by a small number of classes and a large number of variables to focus only on providing a vocabulary of variables that may be extended for consolidation to standardized variables for specific things and functions to map between values from different measurements scales. They use the base ontology description to provide a very lightweight representation of the basic elements of an experimental design and they use views to instantiate it for specific domains.

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• SciCrunch
• 13 years ago - by Anonymous

Provides consultation and training in TEM imaging of biological, chemical, and materials science samples.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Core provides fluorescence imaging services for HUN-REN BRC researchers, for collaborators from the SZTE and other Hungarian institutes, and for EuroBioImaging members. The available equipment consists of confocal laser scanning microscopes, fluorescence and stereo microscopes. Our expertise, image processing software collection and the available courses are supporting the efficient research.

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• SciCrunch
• 2 months ago - submitted by Edyta Vieth

A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions.

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• SciCrunch
• 13 years ago - by Anonymous

Literature mining web service that searches all PubMed abstracts for user provided gene symbols in conjunction with set of custom keywords organized into customized ontology, as well as results from human genome wide association studies (GWAS). Searches gene symbols against list of keywords in PubMed to extract sentences that contain at least one gene and one keyword. Used to mine PubMed for gene relationships using custom ontology and deep learning.

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• RRID-Legacy
• 5 years ago - by Anonymous

Browser-based viewer for Sanger sequencing chromatograms in AB1/ABIF and SCF format. Opens .ab1/.abi/.fsa files, shows raw and analysed traces, basecalls, quality values and the ABIF directory, and puts two reads side by side for comparison. Aligns a read against a reference sequence to highlight mismatches. Exports the read as FASTA, FASTQ or ABIF and the chromatogram as a high-resolution image. Runs entirely in the browser — files are never uploaded.

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• RRID
• 2 months ago - submitted by Fishka Bio

Ontology that formally models information relevant for the rehabilitation of knee conditions. It provides the framework that can be used to collect coded data in sufficient detail to support epidemiologic studies so that the most effective treatment components can be identified, new interventions developed and the quality of future randomized control trials improved to incorporate a control intervention that is well defined and reflects clinical practice.

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• SciCrunch
• 13 years ago - by Anonymous

Non-biting midge

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• RRID-Legacy
• 5 years ago - submitted by Makoto Ishimota