Curator Dashboard

Software tool that scores components of pan genome for associations to observed phenotypic traits while accounting for population stratification, with minimal assumptions about evolutionary processes.Designed to take gene presence absence.csv file from Roary as well as traits file created by user and calculate associations between all genes in accessory genome and traits. It reports list of genes sorted by strength of association per trait.

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• RRID-Legacy
• 5 years ago - by Anonymous

Ontology that contains entities such as: datatype, datatype generator, datatype quality and others giving the possibility to represent arbitrary complex datatypes. This is an important fact for a general data mining ontology that wants to represent and query over modelling algorithms for mining structured data. The ontology was first developed under the OntoDM (Ontology of Data Mining, http://kt.ijs.si/panovp/OntoDM) ontology, but for generality and reuse purpose it was decided to export it as a separate ontology. Additionaly, the OntoDT ontology is based on and ISO/IEC 11404 (http://www.iso.org/iso/catalogue_detail.htm?csnumber=39479) standard and can be reused used independently by any domain ontology that requires representation and reasoning about general purpose datatypes.

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• SciCrunch
• 13 years ago - by Anonymous

A practical diffusion MRI simulator for development, testing, and optimisation of novel MR pulse sequences for microstructure imaging. MISST is based on a matrix method approach and simulates the signal for a large variety of pulse sequences and tissue models. It is designed for diffusion MRI researchers who are interested in understanding and developing diffusion pulse sequences for imaging microstructure.

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

Provides services for analysis of small molecules in biological samples. Specializes in discovery, identification and quantitation of many metabolites and lipids. Provides metabolomics analysis services, professional courses in metabolomics analysis and data processing.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

About FamilySearch FamilySearch is the largest genealogy organization in the world. Millions of people use FamilySearch records, resources, and services to learn more about their family history. For over 100 years, FamilySearch has been actively gathering, preserving, and sharing genealogical records worldwide. Patrons may freely access our resources and service online at FamilySearch.org, or through over 4,500 family history centers in 70 countries, including the renowned Family History Library in Salt Lake City, Utah. Family Connection Families are meant to be central to our livesFamilySearch is a service provided by The Church of Jesus Christ of Latter-day Saints. Our commitment to helping people connect with their ancestors is rooted in our beliefs. We believe that families are meant to be central to our lives and that family relationships are intended to continue beyond this life. We therefore believe that all family membersthose living, those past, and those futureshare an enduring bond that reaches across the generations. All Are Welcome We encourage all people to seek out their ancestors and preserve their family histories. Because interest in family history is not limited by culture, ethnicity, or religious faith, we welcome all who wish to discover more about their family and their heritage.

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• SciCrunch
• 17 years ago - by Anonymous

A multi-platform software dedicated to designing, testing and using brain-computer interfaces (BCI). OpenViBE is a software for real-time neurosciences that can be used to acquire, filter, process, classify and visualize brain signals in real time.

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

Project that aims to provide persistent, unique and resolvable identifiers for research projects based on global handle system, funded by Australian Research Data Commons.

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• RRID
• 3 years ago - submitted by Anita Bandrowski

Steve Silberman's personal blog highlighting science, culture, politics and neurodiversity. Steve is an investigative reporter for Wired and other national magazines.

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• SciCrunch
• 16 years ago - by Anonymous

The Brain Coactivation Map describes all the coactivation networks in the human brain based on the meta-analysis of more than 5,400 neuroimaging articles (from NeuroSynth) containing more than 16,000 individual experiments. The map can be browsed interactively (CoactivationMap.app on GitHub) or queried from a shell using a command line tool (cmtool on GitHub).

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

Molecular Genomics Core Facility at Moffitt Cancer Center in Tampa, FL offers services to assess gene expression, epigenetic modification and sequence variation. Performs bulk and single cell RNA and DNA sequencing on Illumina platform, NanoString nCounter, GeneChip and Illumina array services.Offers services to discuss your project and timeline for your project.

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• SciCrunch
• 14 years ago - by Anonymous

Software package to annotate variants, compute amino acid coding changes, and predict coding outcomes.

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• SciCrunch
• 13 years ago - by Anonymous

A pure JavaScript medical research image viewer, compatible across a range of popular web browsers. The orthogonal viewer supports NIFTI and DICOM files, overlays and atlas labels. It requires Firefox (7+), Chrome (7+), Safari (6+), MobileSafari (iOS 6+), or IE (10+).

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

Provides access to methods and technology in area of glycomics and molecular interactions.Provides individual consultation with investigators to address questions regarding glycosylation, the most common posttranslational modification, and protein glycan interactions.Provides access to mass spectrometry and glycan microarray technologies to help understand functions of glycans and glycan binding proteins.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

An ontology covering the anatomy of Porifera (sponges).

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• SciCrunch
• 13 years ago - by Anonymous

APIs for Net Station data files. APIs are available for C++, C#, and Java.

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• SciCrunch
• 14 years ago - by Anonymous

BioPolymers, Automated Cellular Infrastructure, Flow, and Integrated Chemistry Materials Innovation Platform is platform dedicated to scalable production of bio-derived building blocks and polymers from yeast, fungi, and bacteria. Automated high-throughput synthesis and characterization of bio-derived polymers aims to accelerate discovery and speed development of new high-performance materials.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Software for modeling count data using Dirichlet-multinomial and beta-binomial mixtures with applications to single-cell assays.

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• SciCrunch
• 12 years ago - by Anonymous

A software toolkit for computational morphometry of biomedical images, CMTK comprises a set of command line tools and a back-end general-purpose library for processing and I/O. The command line tools primarily provide the following functionality: registration (affine and nonrigid; single and multi-channel; pairwise and groupwise), image correction (MR bias field estimation; interleaved image artifact correction; EPI unwarping), processing (filters; combination of segmentations via voting and STAPLE; shape-based averaging), statistics (t-tests; general linear model). CMTK is implemented in C++ with parallel processing using POSIX Threads (SMP), OpenMP (SMP), Grand Central Dispatch (SMP), and CUDA (GPU). Supported file formats include Analyze (r/w), NIFTI (r/w), Nrrd (r/w), DICOM (read), BioRad (read). Data exchange with other toolkits, such as ITK, FSL, AFNI, SPM, etc. is thus easily accomplished.

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• SciCrunch
• 14 years ago - by Anonymous

Core provides range of mass spectrometry based proteomics services to assist with protein characterization, identification and quantification, and apply these technologies to solve relevant biological problems. Equipment including Thermo Scientific Orbitrap Fusion Tribrid mass spectrometer, Thermo Scientific Q Exactive hybrid quadrupole-Orbitrap benchtopmass spectrometer, Agilent Technologies 1100 HPLC. Services include Mini SDS-PAGE,Gel Coomassie staining,Protein/Peptide Assay,Protein Precipitation,Solution or in-gel sample digestion and high resolution LC-MS/MS using 1-4Hr gradients,High resolution LC-MS/MS using 1-4Hr gradients (self-digested samples),High resolution MS and MS/MS via direct infusion,Protein digest clean up,TMT quantification,SILAC quantification,Label free quantification,HPLC peptide separation.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. An online atlas of neural function, maintained by Cambridge University and the MRC Cognition and Brain Sciences Unit (CBSU).

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• SciCrunch
• 13 years ago - by Anonymous