Curator Dashboard

Browser for mouse developmental anatomy. Ontology of mouse developmental anatomy was originally developed by Jonathan Bard and his colleagues as part of Edinburgh Mouse Atlas Project (EMAP) in order to provide structured controlled vocabulary of stage specific anatomical structures for developing laboratory mouse.

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• RRID-Legacy
• 5 years ago - submitted by Monique Surles-Zeigler

Three-dimensional brain reference atlas based on the RIKEN25v1 MRI-derived template, based on an average of C. jacchus brains resampled to 70 um3 voxel resolution. It provides detailed parcellations of the basal ganglia and associated subcortical structures, annotated using the Harmonized Ontology of Mammalian Brain Anatomy (HOMBA) unified ontology that enables cross-species alignment and interpretation. The atlas also includes selected published subcortical parcellations to aid in comparing across parcellation schemes.

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• RRID
• 11 months ago - submitted by Anita Bandrowski

Public, nonprofit research institute in the United States focused on advancing veterans health research.

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• SciCrunch
• 15 years ago - submitted by Andrea Stagg

Imaging Core at CCF FRIC provides access to advanced imaging technologies, including: Wide-field and confocal fluorescent microscopes, FLIM capability, Live cell imaging microscopes, Pre-clinical imaging microscopes, BSL-3 imaging platforms for pre-clinical and basic research microscopy projects.Provides consultation on experimental design and optimization, post-acquisition image processing, and support for analysis, visualization, and interpretation of data.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Interactive web application for exploring Dictyostelium gene expression. Provides curated bulk RNA-seq developmental time courses and a developmental single-cell RNA-seq time course of wild-type AX4 and cAMP-signalling mutants. Coordinated modules (expression time courses, differential expression, hierarchical clustering, Gene Ontology enrichment and an interactive UMAP workspace) share one gene selection, and analysis sessions can be bookmarked and exported.

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• RRID
• 1 week ago - by Anonymous

An easy-to-use, highly customizable genome browser you can use to visualize and explore genomic data and annotations, including RNA-Seq, ChIP-Seq, tiling array data, and more.

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• SciCrunch
• 13 years ago - by Anonymous

Guide to reproducible data science to support students and academics as they develop their code, with aim of helping them produce work that will be regarded as gold standard examples of trustworthy and reusable research. Include training material on version control, analysis testing and open and transparent communication with future users.

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• dkNET
• 5 years ago - submitted by Maryann Martone

also known as SciCrunch resolver

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• RRID
• 2 days ago - submitted by anita bandrowski

A de novo transcriptome assembly from next-generation sequencing data.

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• SciCrunch
• 13 years ago - by Anonymous

Software tool as logical extension of Pepsi-SAXS method for small angle neutron scattering. Allows for explicit and implicit hydrogens, allows to specify deuteration level of sample and of buffer and exchange rate of labile hydrogens. Can also compute scattering intensity in absolute scale if sample concentration is provided. Can fit modelled profile on absolute scale within certain user specified margin. Instrumentation resolution is taken into account during processing of input data.

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• RRID-Legacy
• 5 years ago - submitted by Nicolai Johansen

A database that identifies orthologs among publicly available, complete genomes. It offers a comprehensive search and numerous display options for 4.7 million proteins from 1000 species. The main features are the orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed.

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• SciCrunch
• 13 years ago - by Anonymous

Software R package for estimation and tests of hierarchical F statistics.Used to estimate hierarchical F-statistics from haploid or diploid genetic data with any numbers of levels in hierarchy.Intended for analysis of population structure using genetic markers.

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• RRID-Legacy
• 5 years ago - submitted by Brandon Pickett

Core facility that provides immunostaining (frozen and paraffin embedded tissues) and image processing services in confocal microscopy, light microscopy and immunostaining for cells and tissues including confocal microscopy, brightfield and fluorescence microscopy, and immunoperoxidase and immunofluorescence staining. BIDMC Immunostaining and Microscopy Core offers consultation and service for tissue immunostaining with paraffin or frozen sections, and for training to use confocal and widefield microscopes.

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• SciCrunch
• 14 years ago - by Anonymous

Facilitates clinical and translational studies by dissecting immune based mechanisms with diagnostic and therapeutic applications. Offers assays including immunophenotyping and functional characterization, multicolor fluorescence tissue imaging, multiplex cytokine analysis, and cellular assays.Sign in to iLab using University of Colorado credentials.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Free and open access to data about development in countries around the globe.

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• SciCrunch
• 13 years ago - by Anonymous

MDAR Framework establishes minimum set of requirements in transparent reporting applicable to studies in life sciences. MDAR checklist is tool for authors, editors and others seeking to adopt MDAR framework for transparent reporting in manuscripts and other outputs and designed to provide harmonizing principle for reporting requirements currently in use at various journals.

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• RRID-Legacy
• 5 years ago - submitted by Anita Bandrowski

Bioconductor software package for Empirical analysis of Digital Gene Expression data in R. Used for differential expression analysis of RNA-seq and digital gene expression data with biological replication.

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• SciCrunch
• 13 years ago - by Anonymous

Project aims to change anatomy atlas by building atlases through open data, community based collaborative development, and free distribution of medical knowledge. Provides access to several 2D and 3D browser based tools.

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• dkNET
• 4 years ago - submitted by Maryann Martone

This website contains is a list of software applications which currently support NeuroML (last updated: 28th May 2010). Note that not all tools support all parts of NeuroML. The level of support is generally higher for applications closer to the top of the list. Sponsors: This resource is supported by NeuroML. Keywordsl Software, Application, Neuron, Support,

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• SciCrunch
• 17 years ago - by Anonymous

Software tool as coordinate free approach for comparing biological shapes using landmark data.

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• RRID-Legacy
• 4 years ago - by Anonymous