Curator Dashboard

A set of MINC-based image processing tools packaged together. It includes MINC, N3, BICPL, EBKTS, ANIMAL, INSECT, BEaST, Register, Display, and xdisp.

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

Provides access to NMR instrumentation for spectroscopy and imaging. Spectrometers are multinuclear and variety of liquids, solids, surface, and imaging probes are available for use. Individual training, safety and operational training can be requested

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

TGD Wiki is a user-updatable database of information about the Tetrahymena thermophila genome sequence determined at The Institute for Genomic Research (TIGR). TGD Wiki provides information on the genome, genes, and proteins of Tetrahymena collected from the scientific literature, research community and many other resources. In order to keep the information in our database as current as possible, we will soon be inviting the members of the Tetrahymena community to add and update these annotations to reflect published research. TGD Wiki currently offers the following features: * Free, unrestricted read access to all available data * Sequence and annotation data for 24,725 genes (TIGR v.2008) * GBrowse genome browser with links to and from each gene page (TIGR v.2006) * BLAST searching of the TIGR gene models and genome sequence (TIGR v.2006) Tetrahymena Genome Database (TGD) Wiki began in 2004 at Stanford University using the schema and programs of its parent project, Saccharomyces Genome Database. TGD Wiki is now a collaboration between Bradley University, Stanford University, and Cornell University. As we begin TGD Wiki at its new home at Bradley University, the TGD Wiki database contains the following data from TGD: * Gene Names and Aliases * Gene Descriptions * Gene Ontology (GO) Annotations * Homologs (similar genes in selected organisms) * Protein Domains * Associated Literature * Paragraphs (longer, free-text descriptions of gene function, structure, and significance) * Coding and Protein Sequences We have updated the following fields to match the newest gene model sequences (TIGR v.2008): Coding and Protein Sequences, Protein Domains and Gene Descriptions. We will also be recalculating the GO Annotations (IEA evidence code) and Homologs as part of our effort to keep the annotations in TGD Wiki as current as possible. We will be relying on members of the Tetrahymena community to maintain high-quality, updated annotations in the remainder of the fields using our annotation interface. Also setting up new database superdb - for unpublished data Look at Ciliate.org for news on this and other new databases

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• SciCrunch
• 16 years ago - by Anonymous

Standalone software designed to be used by radiology researchers for storage and anonymization of research images.

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

Light microscopy imaging facility within Dartmouth Cancer Center. Services offered include confocal microscopy with Airyscan, multispectral imaging slide scanner, high thoughput brightfield and multichannel fluorescence microscopy of live cells, multichannel TIRF microscopy, photopatterning and microfabrication.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package that provides netCDF storage based methods and functions for manipulation of flow cytometry data.

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• SciCrunch
• 12 years ago - by Anonymous

A comprehensive and open-source library of analysis tools for multi-parametric MRI of the spinal cord. The toolbox includes a template and several atlases, along with state-of-the-art methods to register any data to the template. It also includes useful scripts for data preprocessing: extraction of centerline, automatic segmentation, slice-wise motion correction, etc.

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

Core offers services, training and provides access to optical microscopes and imaging.Offers collaboration for complex projects.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 16, 2023. Software used to detect gene fusions from paired-end RNA-Seq data.

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• SciCrunch
• 13 years ago - by Anonymous

A GUI-based software for real-time fMRI processing, multivoxel pattern decoding and neurofeedback. The package integrates routines for image preprocessing in real-time, ROI-based feedback and brain decoding-based feedback using the FSL and libSVM libraries. Users can create or employ pre-specified visual stimuli for neurofeedback experiments. FRIEND can be used as Windows standalone software or as a multiplatform toolbox (called FRIEND Engine).

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

Provides cross disciplinary scientific, administrative, and educational home for in vivo imaging at Emory University. Provides services for human and animal imaging studies.Supports advancement of scientific research focused on development of imaging biomarkers, and serves to build interdisciplinary educational symposia and training programs.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 30,2023. Open source pipeline for metagenomic data analysis, which enables efficient and parallel analysis of multiple metagenomic datasets and visualization of results for multiple samples. Can perform rapid data mining among microbial community data for comparative taxonomic and functional analysis.

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• SciCrunch
• 13 years ago - by Anonymous

A platform-independent desktop tool for inspecting DICOM header fields, editing DICOM header fields, viewing DICOM images, and transferring DICOM files to a DICOM receiver. DicomBrowser includes scriptable header editing to support various de-identification protocols. DicomBrowser is written in Java and uses ImageJ for image viewing and the dcm4che toolkit for much of its DICOM implementation.

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• SciCrunch
• 14 years ago - by Anonymous

Core provides valid, reliable, appropriate and cost effective methods to investigators that facilitate all types of human research (T1, T2 and T3) and study designs. These methods include 24 hour diet recalls, diet histories, food records/diaries, food frequency questionnaires, observed intakes and weighed intakes of all forms of dietary and nutrient intake (foods, beverages, dietary supplements, liquid nutrition supplements, enteral tube feedings, parenteral support and medications).

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Web services to access UNAVCO data collection. Adding /gps, /met, /pore, /tilt, and /strain gives the sensor JSON description.

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• SciCrunch
• 12 years ago - by Anonymous

Software package for constructing longitudinal atlases, which are the necessary steps for many brain-related applications.

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• SciCrunch
• 14 years ago - by Anonymous

Software R package to create, modify, analyze, and visualize network graph diagrams. Graph and network visualization using tabular data in R.

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• RRID
• 3 years ago - by Anonymous

Software that evaluates the sequence around differentially regulated alternative exons to identify clusters of short and degenerate sequences, referred to as multivalent RNA motifs.

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• SciCrunch
• 13 years ago - by Anonymous

A MATLAB Toolbox for generating realistic head models from available data (MRI and/or electrode locations), for computing numerical solutions for the forward problem of electromagnetic source imaging and for single dipole source localization. The NFT includes tools for segmenting scalp, skull, cerebrospinal fluid (CSF) and brain tissues from T1-weighted magnetic resonance (MR) images. The Boundary Element Method (BEM) and Finite Element Method (FEM) are used for the numerical solution of the forward problem. When a subject MR image is not available a template head model can be warped to measured electrode locations to obtain an individualized head model. Toolbox functions may be called either from a graphic user interface compatible with EEGLAB or from the MATLAB command line.

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• SciCrunch
• 14 years ago - by Anonymous

Software Python library for hierarchical clustering. Fast Hierarchical, Agglomerative Clustering Routines for R and Python.

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• RRID
• 3 years ago - by Anonymous