Curator Dashboard

A structured controlled vocabulary for the annotation of mass spectrometry experiments.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Open resource for nonhuman primate imaging.Used for aggregation independently acquired non-human primate magnetic resonance imaging (MRI) datasets and openly sharing them via the International Neuroimaging Data-sharing Initiative (INDI).Consortium and data collection for the neuroimaging community to map the non-human primate connectome. Anatomical, functional, and diffusion MRI datasets openly shared via the International Neuroimaging Data sharing Initiative (INDI).

• Organization
• NIF
• 8 years ago - submitted by Maryann Martone

Proteomics involves analysis and identification of protein structure and function. Through Proteomics Core, investigators at Mayo Clinic and elsewhere have access to a broad range of proteomics services, technologies and guidance to help them answer scientific questions. Toward a goal of improving patient care, the core offers services and conducts research in the areas of mass spectrometry-based differential proteomics, peptide synthesis, protein and peptide purification, and protein identification, characterization and expression.

• Resource
• SciCrunch
• 14 years ago - by Anonymous

Assessment test that measures the ability of patients to identify words and letters. The participant is asked to read and pronounce letters and words as accurately as possible. The test administrator scores them as right or wrong. For the youngest children, the initial items require them to identify letters (as opposed to symbols) and to identify a specific letter in an array of 4 symbols. The test is given in a computerized adaptive format and requires approximately 3 minutes. This test is recommended for ages 7-85, but is available for use as young as age 3, if requested. Separate but parallel reading tests have been developed in English and in Spanish.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Network to facilitate funding to ensure the long-term sustainability of the world’s open science infrastructure. A community-led effort to provide a framework for libraries, policymakers and other stakeholders to collectively fund and stabilize an infrastructure of freely available open science services.

• SciCrunch
• 8 years ago - submitted by Anita Bandrowski

Web tool for determining HLA locus and allele disequilibria by population ethnicity.

• Resource
• RRID
• 2 years ago - submitted by Steven Heron

Data set of a crowd-sourced community effort to extract structured information from Wikipedia and make this information available on the Web. DBpedia allows you to ask sophisticated queries against Wikipedia, and to link the different data sets on the Web to Wikipedia data. It is hoped that this work will make it easier for the huge amount of information in Wikipedia to be used in some new interesting ways. Furthermore, it might inspire new mechanisms for navigating, linking, and improving the encyclopedia itself. The project extracts knowledge from 111 different language editions of Wikipedia. The DBpedia project maps Wikipedia infoboxes from 27 different language editions to a single shared ontology consisting of 320 classes and 1,650 properties. The mappings are created via a world-wide crowd-sourcing effort and enable knowledge from the different Wikipedia editions to be combined. The project publishes regular releases of all DBpedia knowledge bases for download and provides SPARQL query access to 14 out of the 111 language editions via a global network of local DBpedia chapters. In addition to the regular releases, the project maintains a live knowledge base which is updated whenever a page in Wikipedia changes. DBpedia sets 27 million RDF links pointing into over 30 external data sources and thus enables data from these sources to be used together with DBpedia data. Several hundred data sets on the Web publish RDF links pointing to DBpedia themselves and thus make DBpedia one of the central interlinking hubs in the Linked Open Data (LOD) cloud.

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• SciCrunch
• 13 years ago - by Anonymous

Platform for publishing reproducible code and datasets and providing access to national supercomputers, private clouds, and institutional high-performance computer systems to promote open software and data sharing to advance understanding of the human brain.

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• NIF
• 8 years ago - submitted by Matt Travers

Multi-functional facility that provides primary service of DNA sequencing, access to shared equipment housed in a centralized location, access to frequently used molecular biological reagents. The Core also maintains an Invitrogen Supply Center that stocks many routinely used reagents for molecular biological research. Core staff facilitate through the Meharry-Vanderbilt Alliance the ordering of reagents and supplies.

• Resource
• SciCrunch
• 14 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 6, 2023. A clinical spinal cord injury network that provides a database of clinical assessment data from spinal cord injured patients. The EMSCI assessment scheme currently consists of the so called core sets: neurological (ISNCSCI), functional (10MWT, 6MWT, TUG, WISCI2) measurements and independence measures (SCIM3). Additional assessments are: neurophysiology (MEP, SSEP, NCV), pain, hand function and an urodynamics.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Software tool to standardize and facilitate connectivity studies through a graphical user interface and validated preset parameters.

• Resource
• NIF
• 8 years ago - submitted by Matt Travers

Provides instrumentation and expertise for the automation of laboratory processes. Facility has automated screening platforms and accessory equipment to enable flexible and scalable in vitro and in vivo assays including organoids. Services include access to chemical and genome-wide siRNA libraries, assay development and implementation, and data analysis. Applications include drug discovery and lead validation; ELISA-based assays for immune surveillance; protein biomarker discovery using OLINK proteomics technology; multiplexed barcode screening assays.

• Resource
• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Software for an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run with as low as just a few kilobytes of memory.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Portal for population based pediatric cohorts studied with objective sleep studies. Includes children with in-home sleep studies, acoustic reflectometry, anthropometry, spirometry, blood pressure (BP), and neuropsychology (NP) and behavioral assessments. Signals recorded include EEG, ECG, EOG, EMG, SpO2, airflow (thermocouple) nasal pressure, respiratory effort, position, plethysmography, light, HR.

• Resource
• RRID-Legacy
• 8 years ago - submitted by Sara Mariani

Software R library for parentage assignment using Bi-Allelic Genetic Markers. Used for assignment of parentage with molecular markers. Improved paternity assignment among close relatives using simple exclusion method for bi-allelic markers.

• Resource
• SciCrunch
• 2 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE; REPLACED BY NEPHROSEQ; A growing database of publicly available renal gene expression profiles, a sophisticated analysis engine, and a powerful web application designed for data mining and visualization of gene expression. It provides unique access to datasets from the Personalized Molecular Nephrology Research Laboratory incorporating clinical data which is often difficult to collect from public sources and mouse data.

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• SciCrunch
• 13 years ago - by Anonymous

Core provides technology for functional proteomics studies and centralized, standardized and quality controlled services locally and globally.

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• SciCrunch
• 8 years ago - submitted by Anita Bandrowski

Core provides full-service mouse genetic engineering support to researchers.Helps to select model for your research program, design and build any requisite constructs and reagents, and produce live mice. The most popular requests are for CRISPR-based gene edited mice and transgenic mice. Services include creation of engineered alleles for knockouts, conditional knockouts, SNP knockins, tag and marker insertions, deletions of up to 300kb, duplications, and transgenic alleles. These novel mouse models have been made on a wide spectrum of genetic background strains, including but not limited to C57BL/6J, C57BL/6N, NOD, BALB/cJ, FVB/Crl, NSGS, various 129 substrains, collaborative cross strains, and on mice that are already genetically modified. Breeding and genotyping program supports breeding to establish germline transmission and can also create cohorts for investigators. Provides strain cryopreservation, rederivation and rescue services, as well as cryostorage.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Application ontology for entities related to insecticide resistance in mosquitos

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Software R package from CRAN as a modular leaf ordering methods for dendrogram nodes. Used as sorting methods to improve readability and interpretability of tree structure. Used for comparison of different distance measures or linkage types, identification of tight clusters and outliers, and for coupled heatmap visualization.

• Resource
• RRID-Legacy
• 8 years ago - by Anonymous