Curator Dashboard

Manuals for R created on Debian Linux that can be downloaded as PDF files, EPUB files (for R-devel and R-patched), or directly browsed as HTML. They may differ from the manuals for Mac or Windows on platform-specific pages, but most parts will be identical for all platforms.

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• SciCrunch
• 13 years ago - by Anonymous

Provides series of modules which enable functions of Vascular Modeling Toolkit in 3D Slicer. Functionality includes vessel enhancement filtering, level set segmentation, centerline computation, network extraction and branch splitting.VMTK is available through the extension manager for 3D Slicer from version 4.6.2. Main difference to Slicer3 version is that now all VMTK modules come as one extension bundle. This should enhance the installation experience for users.

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

Privately held company that develops and produces antibodies, ELISA kits, ChIP kits, proteomic kits, and other related reagents used to study cell signaling pathways that impact human health.

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• SciCrunch
• 17 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Software designed for the rapid, reproducible and computer-aided analysis of microarray images and the quantification of gene expression.

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• SciCrunch
• 13 years ago - by Anonymous

The WormGUIDES team is working to connect the developmental history of cells in the embryo with the final working assembly of parts in the nervous system. Our ability to make these connections hinges in part upon our development of new imaging (iSPIM) and image analysis (Starrynite) technologies for live embryos. However, it will also require a more comprehensive understanding of the mature ultrastructure of the nervous system, more than the previously published analyses of the nematode's neuroanatomy currently afford us. We have therefore completed our first draft of an EM-based digital model of the most complex neuroanatomical region in the worm, the adult nerve ring. And we have deployed a novel system to share the model and underlying data on the web, linking each cell to crucial information about its function, gene expression profile, and network of synapses and cell-cell interactions.

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• SciCrunch
• 11 years ago - by Anonymous

Core offers services to identify and quantify monoamine neurotransmitters, amino acids, purine bases, and nucleotides from variety of biological samples. Provides expertise to develop and validate HPLC methods to measure other small molecule compounds, peptides, and proteins.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

THIS RESOURCE IS NO LONGER IN SERVICE. Documented August 21, 2017.

Repository for sharing of neuroscience data, text, images, sounds, movies, models and simulations.

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• SciCrunch
• 13 years ago - by Anonymous

Software as collaborative, open source application dedicated to analysis of brain recordings: MEG, EEG, fNIRS, ECoG, depth electrodes and animal invasive neurophysiology. User-Friendly Application for MEG/EEG Analysis.

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• SciCrunch
• 17 years ago - by Anonymous

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• NIF
• 3 years ago - by Anonymous

Software package that allows inferring gene regulatory networks with direct physical interactions from microarray expression data using C3NET.

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• SciCrunch
• 13 years ago - by Anonymous

Tool to remove facial features from an MRI structural image for the purpose of de-identification.

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• SciCrunch
• 14 years ago - by Anonymous

Clinical Laboratory Improvement Amendments certified laboratory established to provide scientific support to investigators conducting clinical studies in humans, preclinical studies in animals and/or studies in veterinary medicine. Conducts immunology based assays needed to monitor patients in clinical immunotherapy trials. Offers molecular and cellular assays for investigators in different fields, including custom assays designes.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Ontology for Inventories of Clinical Data Research Networks, Patient-Powered Research Networks, and Patient Registries

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• SciCrunch
• 13 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 13, 2026. Software program, executable under any Windows32 OS, performs Group BSS (Blind Source Separation) analysis comparing two groups of individuals and it performs NICA (Normative ICA) analysis where individuals are compared individually to a (normative) group. All analysis is performed in the frequency domain, that is, for all frequencies. The program also performs all these analysis for qEEG, that is, at the electrode level, without any BSS. The program does all computations, saves and displays results. The rationale and methods used in this program are explained in all details in the following paper: Congedo M, John ER, De Ridder D, Prichep L (2010) Group Independent Component Analysis of Resting-State EEG in Large Normative Samples International Journal of Psychophysiology 78, 89-99.

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• SciCrunch
• 14 years ago - by Anonymous

Web based notebook that enables data driven, interactive data analytics and collaborative documents with SQL, Scala, Python, R and more. Multi purposed web based notebook which brings data ingestion, data exploration, visualization, sharing and collaboration.

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• RRID
• 3 years ago - submitted by Robin Bramley

Web accessible database of data extracted from scientific literature, focusing on proteins that are drug-targets or candidate drug-targets and for which structural data are present in Protein Data Bank . Website supports query types including searches by chemical structure, substructure and similarity, protein sequence, ligand and protein names, affinity ranges and molecular weight . Data sets generated by BindingDB queries can be downloaded in form of annotated SDfiles for further analysis, or used as basis for virtual screening of compound database uploaded by user. Data are linked to structural data in PDB via PDB IDs and chemical and sequence searches, and to literature in PubMed via PubMed IDs .

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• SciCrunch
• 17 years ago - by Anonymous

Statistical method and software for conducting image- and coordinate-based meta-analysis of neuroimaging studies investigating differences in brain activity (e.g. BOLD response in fMRI, metabolism in PET) or structure (e.g. gray matter volume in VBM, voxel-based or TBSS white matter fractional anisotropy in DTI, etcetera).

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• SciCrunch
• 14 years ago - by Anonymous

Software tool for single cell RNA sequencing analysis. Command line tool for easy and scalable single cell RNA sequencing analysis.

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• RRID
• 3 years ago - submitted by Sinan U. Umu

Vervet (Chlorocebus aethiops sabaeus) probabilistic atlas that defines an anatomical space (template) with associated tissue and regional prior probability maps. The atlas was produced from whole head MRI of 10 normal adult animal subjects. The package consists of two atlases. The Biased directory contains the average template and probabilistic atlases for selected tissue classes constructed by registering the training population to one subject. The Unbiased directory contains the atlas constructed using unbiased estimation. The atlas is suitable for use in any segmentation tool using a probabilistic atlas, for example those in Slicer.

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• SciCrunch
• 14 years ago - by Anonymous

Modeling platform to study the basic interactions between synaptic elements that allows the user to study qualitatively, and also quantitatively the relative contributions of diverse mechanisms underlying synaptic efficacy: the relevance of each and every element that comprises a synapse, the interactions between these components and their subcellular distribution, as well as the influence of synaptic geometry (presynaptic terminal, cleft and postsynaptic density). This platform consists of a graphical interface in which elements that comprise a single glutamatergic synapse (both pre- and post-synaptically), their behavior as well as the underlying synaptic geometry can be modified. For example, EONS offers the ability to study the effect of voltage-gated calcium channels density and distribution, the number and location of receptors and more. EONS is a parametric model of a generic glutamatergic synapse that takes into account pre-synaptic mechanisms, such as calcium buffering and diffusion, neurotransmitter release, diffusion and uptake in the cleft, and postsynaptic elements, such as ionotropic AMPA and NMDA receptors, their distribution and synaptic geometry, as well as metabotropic glutamate receptors. There are no complicated equations to write: all the models are predefined. This version is a great tool for first time users and students interested in learning about synapses, as well as for studying geometry and distribution hypotheses in a 2D rectangular geometry. System Requirements: EONS V1.2 is a Windows program but can be also successfully installed and run on Mac and Linux.

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• SciCrunch
• 14 years ago - by Anonymous