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Bacteriophages allow selective depletion of gut bacteria to produce a targeted-bacterium-depleted mouse model.

Yanqing Li | Feng Zhu | Yan Li | Shunli Pan | Hongliang Wang | Zai Yang | Zhihao Wang | Zhenyu Hu | Jianfeng Yu | Joseph D Barritt | Tianhui Li | Xi Liu | Yawen Wang | Xiancang Ma | Bing Liu
Cell reports methods | 2022

The gut microbiome is essential for human health. Mouse microbiota models, including gnotobiotic mice, are the most prominent tools to elucidate the functions of gut bacteria. Here, we propose a targeted-bacterium-depleted (TBD) model using lytic bacteriophage to selectively deplete gut bacterium of healthy or otherwise defined mice. These phage-treated animals should have a near-complete spectrum of gut bacteria except for the depleted bacterium. To prove the concept, we employed Escherichia coli-specific phage T7 to repress E. coli in the healthy mice. Our results showed that the E. coli-depleted mice exhibited bravery-like behaviors, correlated to the presence of E. coli rather than the equilibrium among gut bacteria. Thus, we demonstrate that the TBD model is a powerful tool to elucidate the function of a specific bacterial species within a near-intact gut microbiota environment and complements gnotobiotic mice models.

Pubmed ID: 36452872

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C57BL/6J (tool)

RRID:IMSR_JAX:000664

Mus musculus with name C57BL/6J from IMSR.

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