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URL: http://www.bioconductor.org/packages/release/bioc/html/SRAdb.html
Proper Citation: SRAdb (RRID:SCR_006524)
Description: Software package to make access to the compilation of metadata from NCBI SRA and tools associated with submission, study, sample, experiment and run much more feasible. This is accomplished by parsing all the NCBI SRA metadata into a SQLite database that can be stored and queried locally. Fulltext search in the package make querying metadata very flexible and powerful. fastq and sra files can be downloaded for doing alignment locally. Beside ftp protocol, the SRAdb has funcitons supporting fastp protocol (ascp from Aspera Connect) for faster downloading large data files over long distance. The SQLite database is updated regularly as new data is added to SRA and can be downloaded at will for the most up-to-date metadata.
Abbreviations: SRAdb
Synonyms: SRAdb - A compilation of metadata from NCBI SRA and tools
Resource Type: software resource
Defining Citation: PMID:23323543
Keywords: bio.tools
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