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URL: http://patchwork.r-forge.r-project.org/
Proper Citation: Patchwork (RRID:SCR_000072)
Description: Software tool for analyzing and visualizing allele-specific copy numbers and loss-of-heterozygosity in cancer genomes. The data input is in the format of whole-genome sequencing data which enables characterization of genomic alterations ranging in size from point mutations to entire chromosomes. High quality results are obtained even if samples have low coverage, ~4x, low tumor cell content or are aneuploid. Patchwork takes BAM files as input whereas PatchworkCG takes input from CompleteGenomics files. TAPS performs the same analysis as Patchwork but for microarray data.
Abbreviations: Patchwork
Resource Type: software resource
Defining Citation: PMID:23531354
Keywords: genome, allele, copy number, bam, unix, r, bio.tools
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