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Integrated

Virtual database of individual data sources, maintained by SciCrunch participating groups. Database topics are varied, including animals, grants, software, brain gene expression, and clinical trials.


Details

  • Related Condition:
  • Funding Agency:
  • Relation: used by: NIF Data Federation
  • Reference:
  • Website Status: Last checked down
  • Alternate IDs: nlx_154697
  • Alternate URLs:
  • Old URLs: http://neurolex.org/wiki/Category:Resource:Integrated
  • v_uuid: f2172664-1499-555d-9e84-3b7768695e4d
License Information:
Terms of Use

These Terms of Use are a contract between you and the Neuroscience Information Framework ("NIF"). The NIF operated website www.neuinfo.org, and products, services and affiliated websites offered by the Neuroscience Information Framework; collectively the NIF "Sites/Services." Through these services the NIF provides a dynamic inventory of Web-based neuroscience resources, data, and tools. NIF advances neuroscience research by enabling discovery and access to public research data and tools worldwide through an open source, networked environment.

By using the NIF Sites/Services, you are agreeing to be bound by the following terms and conditions ("Terms of Use"). If you do not agree to these Terms of Use, do not visit or use the NIF Sites/Services.

Ownership of Content
The copyright in the material contained in and provided by the NIF Sites/Services belongs to the Neuroscience Information Framework or its licensors. The trademarks and other elements appearing on the NIF Sites/Services are protected by California, United States, and international copyright, trade dress, patent, and trademark laws, international conventions and all other relevant intellectual property and proprietary rights and applicable laws. All content of the NIF Sites/Services, except where otherwise noted, is licensed under a Creative Commons Attribution License.

Reproduction of Data
All data indexed and referenced by NIF through the NIF Sites/Services, unless otherwise indicated, are licensed by the respective owners of such data. Use and distribution is subject to the Terms of Use by the original resource as well as citation of NIF and the original source in accordance with the Creative Commons Attribution License.

Integrated: Grants

Used in

Integrated Grants is a virtual database currently indexing funded research resources including NIH Research Portfolio Online Reporting Tool (RePORT) (current grants, updated monthly), International Alzheimer’s Disease Research Portfolio (IADRP) database and ResearchCrossroads (1970-2008, defunct as of 2009).
Note: ResearchCrossroads is no longer in service.

Integrated: Models

Integrated Models is a virtual database currently indexing computational models from: CellML, ModelDB, Open Source Brain, SimTK.

Integrated: Blogs

Used in

Integrated Blogs is a virtual database indexing a variety of scientific blog and news resources. A list of the participating resources is provided here.

Integrated: Jobs

Integrated Jobs is a virtual database indexing the following Scientific Job resources: Naturejobs, Monster, Indeed, Hays, jobs.ac.uk, New Scientist Jobs, Science Careers, Access-ScienceJobs.co.uk, TheScienceJobs.com, ScienceBlogs: Jobs and It Takes 30.

Integrated: Connectivity

Integrated Connectivity is a virtual dataset of connectivity statements from Avian Brain Circuitry Database (ABCD), BlueBrain Bluima Connectivity, Brain Architecture Management System (BAMS), BrainMaps.org, CoCoMac,Connectome Wiki, and the Hippocampal-Parahippocampal Table of Temporal-Lobe.com.
Note: ABCD, Connectome Wiki, and the Hippocampal-Parahippocampal Table of Temporal-Lobe.com are no longer in service.

Integrated: Videos

Used in

Integrated Videos is a virtual database indexing videos and other multimedia from: NIH VideoCast, GoCognitive, UCSF Laboratory for Visual Neuroscience, The Guardian: Science Videos, BioInteractive, CLARITY resources and Journal of Visualized Experiments (JoVE). JoVE is a peer-reviewed, PubMed-indexed journal devoted to the publication of biological research in the video format, and NIH VideoCast is a vast archive of scientific talks given at various NIH meetings and functions.

Integrated: Disease

Integrated Disease is a virtual database that indexes authoritative information on disease and treatment options from: NINDS Disorder List and PubMed Health.

Integrated: BrainGeneExpression

Integrated Brain Gene Expression is a virtual database indexing mouse brain region gene expression data from: Allen Mouse Brain Atlas, Gene Expression Nervous System Atlas (GENSAT), and Mouse Genome Informatics (MGI).

Integrated: Annotation

Integrated Manually Extracted Annotation is a virtual database of annotations manually created by various database curators. Each row represents an annotation item such as the reagent used in a paper or a data set link. Many of these annotations are published in PubMed as LinkOuts. (View participating resources)

Integrated: Datasets

The Integrated Datasets is a virtual database currently indexing a variety of data sets. A list of the participating data resources is provided here.

Integrated: Cell Lines

Integrated Cell Lines is a virtual database indexing available cell lines from: American Type Culture Collection (ATCC), Beta Cell Biology Consortium (BCBC), Cellosaurus, Coriell Cell Repositories, Drosophila Genomics Resource Center (DGRC), International Mouse Strain Resource (IMSR), International Stem Cell Registry, NIH Human Embryonic Stem Cell Registry, National Cancer Institute's Developmental Therapeutics Program (DTP), and Nuclear Receptor Signaling Atlas (NURSA). Alert: The links to IMSR sometimes do not produce proper results in IMSR, we have asked them to update this, but currently users may need to take the identifier for the resource and use google to find the appropriate cell lines.

Integrated: Animals

Used in

Resource Identification Portal

Integrated Animals is a virtual database currently indexing available animal strains and mutants from: AGSC (Ambystoma), BCBC (mice), BDSC (flies), CWRU Cystic Fibrosis Mouse Models (mice), DGGR (flies), FlyBase (flies), IMSR (mice), MGI (mice), MMRRC (mice), NSRRC (pig), NXR (Xenopus), RGD (rats), Sperm Stem Cell Libraries for Biological Research (rats), Tetrahymena Stock Center (Tetrahymena), WormBase (worms), XGSC (Xiphophorus), ZFIN (zebrafish), and ZIRC (zebrafish). Note, the IMSR data is linked, but users may need to re-execute the search if the top mouse is not returned properly.
Note: BCBC is no longer in service, so the links may not be functional.

Integrated: Software

Integrated Software is a virtual database indexing software and tools from: SciCrunch, NITRC, Visiome Platform, Cerebellar Platform, Brain Machine Interface Platform and Genetic Analysis Software (GAS).

Integrated: GeneDiseaseInteraction

Integrated Gene-Disease Interaction is a virtual database currently indexing interaction between genes and diseases from the Online Mendelian Inheritance in Man (OMIM) and the Comparative Toxicogenomics Database (CTD).

Integrated: Podcasts

Integrated Podcasts is a virtual database currently indexing multiple podcast resources. A list of the participating resources is provided here.

Integrated: Clinical Trials

Used in

Integrated Clinical Trials is a virtual database currently indexing clinical trials from: EU Clinical Trials Register and ClinicalTrials.gov.