URL: https://github.com/theislab/scanpy
Proper Citation: scanpy (RRID:SCR_018139)
Description: Software Python tool for large scale single cell gene expression data analysis. Integrates analysis possibilities of established R-based frameworks, provides pre processing, visualization, graph-drawing and diffusion maps, clustering, identification of marker genes for clusters via differential expression tests and pseudo temporal ordering via diffusion pseudo time.
Synonyms: Single Cell Analysis in Python
Resource Type: data processing software, data analysis software, software application, software resource
Defining Citation: PMID:29409532
Keywords: Large scale, single cell, gene expression, data analysis, R, pre processing, visualization, graph drawing, diffusion map, clustering, marker gene, differential expression test, bio.tools
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