Curator Dashboard

Software repository provides optimization algorithms applied to Jarvis3 genomic compressor used for compression of genomic sequences.

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• 1 year ago - by Anonymous

Software R tool for enumerating immune cell subsets from whole tumor tissue samples. Utilizes adaptive least trimmed square to automatically detect and remove outliers before estimating cell compositions.

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• 1 year ago - by Anonymous

Software ensembl based annotation R package. Exposes annotation databases generated from Ensembl. This package loads SQL connection to database containing annotations from Ensembl.

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• 1 year ago - by Anonymous

Software Python package to build gene regulatory networks using combined or separate single-cell gene expression and single-cell chromatin accessibility (scATAC-seq) data. Used for inferring and analyzing enhancer-driven gene regulatory networks using single-cell multiomic data.

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• 1 year ago - by Anonymous

Core provides access to expertise and instrumentation for bioanalytical assay development and quantitative sample analysis, experimental design, data analysis and modeling applied in pre-clinical and clinical research involving development of novel therapies for cancer treatment and prevention, chemopreventive or carcinogenic components in food/environmental sources, and biomarkers relevant to drug therapy, nutrients, food products, and dietary patterns.

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• 1 year ago - by Anonymous

BRAIN Initiative data archive for multi-modal neurophysiological and behavioral data, supporting the Brain Behavior Quantification and Synchronization (BBQS) Program. Accessible and versatile data archive for storage, processing, and curation of multimodal neurophysiological and behavioral datasets. EMBER extends established BRAIN Initiative data infrastructure, provides new data harmonization and synchronization capabilities, and supports scalable integrations for data coordination and AI driven batch processing to enable the goals of the BBQS program.

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• 1 year ago - submitted by Brock Wester

Core assists in evaluating disease and its cure within complete biological system. Combines expertise and instrumentation to assist investigations on the mechanisms of disease development, to enable the evaluations of drug efficacy and resistance, and to provide the means for testing novel strategies and devices for disease detection and drug delivery.

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• SciCrunch
• 1 year ago - submitted by Edyta Vieth

Software application to prepare figures for publication in reproducible way. This means you receive a figure representing your data and alongside a generated code file that can exactly reproduce the figure as you put them in the publication, without the need to readjust things in external programs. Offers interactive interface to find the best way to present your data in a figure for publication. Added formatting an styling can be saved by automatically generated code. To compose multiple figures to panels, pylustrator can compose different subfigures to a single figure.

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• 1 year ago - by Anonymous

Flow Cytometry Core provides instrumentation, expertise and services. Samples are prepared by individual investigators, who then deliver to the Core for flow cytometric analysis or cell sorting. The Core also provides assistance in grant and publication preparation, publication-quality graphics, and the development of experimental designs.

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• 1 year ago - by Anonymous

Vector Core produces gene transfer vectors that facilitate transfer of specific genes into either normal or aberrant cells. Provides intellectual and technical advice to researchers regarding the optimal use of these systems.

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• 1 year ago - by Anonymous

nano@stanford is a group of shared labs at Stanford University focused on fabrication and characterization at the nanoscale and microscale. The labs provide access to shared scientific instrumentation, laboratory infrastructure, and expert staff support to enable multidisciplinary research and educate tomorrow’s scientists and engineers.

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• 1 year ago - submitted by Yang Bai

Agilent Seahorse XF Pro analyzer measures and reports the oxygen consumption rate (OCR), proton efflux rate (PER) or extracellular acidification rate (ECAR), as well as ATP production rates of live cells in a 96-well format. This analyzer features excellent OCR precision at low rates, verified performance, optimized temperature control, and is automation enabled. The XF Pro analyzer is also equipped with advanced software, standardized workflows, and advanced data analytics available in the Agilent Seahorse Analytics software. These features greatly simplify the entire XF assay experience, from assay design to data QC and interpretation.

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• 1 year ago - by Anonymous

Core is supported by the Emory University School of Medicine. Enables large-scale, secure image extraction and de-identification to empower clinical, translational, and AI research.

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• SciCrunch
• 1 year ago - submitted by Edyta Vieth

Software tool to call somatic short mutations via local assembly of haplotypes. Somatic variant caller that uses local assembly and realignment to detect SNVs and indels.

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• 1 year ago - by Anonymous

Interactive database of protein protein interactions modeled by AlphaFold multimer. Classifier-curated database of AlphaFold-modeled protein-protein interactions.

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• 1 year ago - by Anonymous

Structural interactome viewer. Interactive database of endosomal protein-protein interactions identified by cross-linking mass spectrometry and modeled by AlphaFold multimer. Structural protein interactome of human early endosomes.

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• 1 year ago - by Anonymous

Web server for multistep T cell epitope prediction. Also considers proteasome cleavage and TAP binding, therefore it is able to mimic the MHC binding machnism in real life. At present only HLA class I alleles are included in the prediction.

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• 1 year ago - by Anonymous

Software Python library for parallel and distributed computing. Enables parallel and out-of-core computation.

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• 1 year ago - by Anonymous

Web-based visual exploration and analysis of genome interaction maps.

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• 1 year ago - by Anonymous

UCSC Genome Browser source tree. Stable branch: "beta".

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• 1 year ago - by Anonymous