Curator Dashboard

Software Python commandline tool for rapid calculation and correction of fragment length specific GC biases in WGS cfDNA sequencing datasets for liquid biopsy applications. Used for evaluating and correcting GC biases in cell-free DNA at fragment level.

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• 1 year ago - by Anonymous

Software R tool for generating brain-predicted age value, using Gaussian Processes regression. Used for generating brain-predicted age value from raw T1-weighted MRI scan.

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• 1 year ago - by Anonymous

Mechanical Core provides variety of fabrication, customization and repair services for mechanical devices and equipment. Offers precision machining of metals and plastics, welding of structural and exotic metals, instrument refurbishing and mechanical repair.

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• 1 year ago - submitted by Matthew Rudy

Software tool as simple wrapper of tabula-java to extract table from PDF into pandas DataFrame. Python wrapper of tabula-java, which can read tables in PDF. Also enables you to convert PDF file into CSV, TSV or JSON file.

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• 1 year ago - by Anonymous

Web portal contains information on how to calculate DNA methylation (DNAm) age based on data measured using the Illumina Infinium platform.

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• 1 year ago - by Anonymous

Core provides microbial sequencing, high-throughput nucleic acid extraction, microbial cultivation, and strain identification.

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• 1 year ago - submitted by Edyta Vieth

Software R package for computing pseudo-observations for censored data regression. Computes pseudo-observations for modeling: competing risks based on the cumulative incidence function, survival function based on the restricted mean, survival function based on the Kaplan-Meier estimator.

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• 1 year ago - submitted by Mikael Eriksson

Software R package for data cleaning, exploring, and simple reporting. At its core reside the following four functions: freq(), ctable(), descr(), and dfSummary(). Used to quickly and neatly summarize data.

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• 1 year ago - by Anonymous

Database that attempts to consolidate information on known clinical and selected set of pre-clinical biomarkers into single resource. Database includes five major types of biomarkers (condition specific, protein, chemical, karyotypic and genetic) and six biomarker categories (diagnostic, risk, prognostic, safety, monitoring, and response). Provides information such as: biomarker names and synonyms, associated conditions or pathologies, detailed disease descriptions, detailed biomarker descriptions, biomarker specificity, sensitivity and ROC curves, standard reference values (for protein and chemical markers), variants (for SNP or genetic markers), sequence information (for genetic and protein markers), molecular 2D and 3D structures (for protein and chemical markers), tissue or biofluid sources (for protein and chemical markers), chromosomal location and structure (for genetic and karyotype markers), clinical approval status and relevant literature references. Users can browse the data by conditions, condition categories, biomarker types, biomarker categories or search by sequence similarity through the advanced search function.

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• 1 year ago - submitted by Anita Bandrowski

Core provides mechanical and biomedical engineering expertise and services. Specializes in early-stage development and proof-of-concept prototypes. Utilizes 3D modeling, 3D printing, nitinol shape setting, and laser cutting to design and fabricate custom medical devices, test fixtures, and CT/MRI-based anatomy models.

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• 1 year ago - submitted by Matthew Rudy

Software tool as enhanced version of NRSA for analyzing nascent transcription profiles generated by PRO-seq, GRO-seq, (m)NET-seq, and Butt-seq data.

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• 1 year ago - submitted by huachang chen

Software R package provides interface to popular tools for importing, quality control, analysis, and visualization of single cell RNA-seq data. Allows users to integrate tools from various packages at different stages of analysis workflow.

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• 1 year ago - by Anonymous

National Academy of Sciences of the Republic of Armenia is the Armenian national academy, functioning as the primary body that conducts research and coordinates activities in the fields of science and social sciences in Armenia.

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• 1 year ago - submitted by Edyta Vieth

Sequencing core facility provides access to high-throughput DNA sequencing technologies and related services. Equipped with sequencing instruments, including long-read platforms, Illumina systems, and more. Provides comprehensive suite of tools to support sample preparation and ensure the quality of all sample types.

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• 1 year ago - submitted by Arsen Arakelyan

Core offers variety of specimen preparation services for transmission and scanning electron microscopy, vibratome, paraffin, cryostat and JB-4 sectioning.Offers routine staining and various histological special stains, PASH, Masson Trichrome, Van Gieson and many others, immunohistochemical services including immuno-EM studies. Core staff performs all aspects of the ultrastructural procedures from specimen processing to imaging (for Electron Microscopy, TEM and SEM) and processing, sectioning, and staining for light microscopy (paraffin, cryostat, and JB-4).

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• 1 year ago - by Anonymous

Software set of pipelines to analyze piRNA/transposon from different Next Generation Sequencing libraries (small RNA-seq, RNA-seq, Genome-seq, ChIP-seq, CAGE/Degradome-Seq).

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• 1 year ago - by Anonymous

ABSL3 core is specialized in environments designed to facilitate safe research with Risk Group-3 microbial pathogens, which pose significant risk of airborne transmission and serious disease. Core safe for conducting high-level infectious disease research.

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• 1 year ago - submitted by Edyta Vieth

Core is part of Unit for Laboratory Animal Medicine. Provides services to perform sterile, minimally-invasive, and non-sterile surgical procedures on both small and large animals. Facility personnel are licensed veterinary technicians and AALAS Technologists.ULAM Veterinary Board-Certified Surgeon also oversees daily operations.Users must have an approved animal use protocol from the Institutional Animal Care & Use Committee (IACUC) prior to utilizing ASOR services and facilities.

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• 1 year ago - submitted by Edyta Vieth

Design and synthesize drug-like molecules and diagnostic probes in your biomedical investigations to translate your research in all therapeutic areas and disease states.

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• 1 year ago - submitted by Edyta Vieth

Core mission is to advance environmental field research, engage students in scientific discovery, and provide information needed to understand and sustain ecosystems from local to global scales. Seek solutions to critical environmental challenges.

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• 1 year ago - submitted by Edyta Vieth