Curator Dashboard

Software Python3 tool for advanced, user-friendly detection and nuanced analysis of biological relatedness from ancient DNA samples in archaeogenomics. Can classify up to third-degree relatedness and differentiate between two types of first-degree relatedness, full siblings and parent-offspring.

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• 1 year ago - by Anonymous

Software tool to infer family relationships for degraded samples. Used to infer degree of relationship (up to second degree, i.e. nephew/niece-uncle/aunt, grandparent-grandchild or half-siblings) for pair of low-coverage individuals.

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• 1 year ago - by Anonymous

Software tool to simulate pedigree structures. Used for simulating relatives that can utilize either sex-specific or sex averaged genetic maps and also either model of crossover interference or traditional Poisson model for inter-crossover distances.

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• 1 year ago - by Anonymous

Software framework for analyzing low-depth next-generation sequencing data in heterogeneous/structured populations using principal component analysis.

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• 1 year ago - by Anonymous

Software tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias. Used to identify identity-by-descent fragments and to estimate degree of relatedness from ancient DNA data.

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• 1 year ago - by Anonymous

Ancient DNA genetic relatedness estimation software relying on pedigree simulations. Used to compute estimate of relatedness from randomly sampled pseudo-haploidized variant calls, and leverages high-definition pedigree simulations to bypass the use of cohort of individuals.

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• 1 year ago - by Anonymous

Software sequence simulator for ancient DNA. For ancient hominin samples can also simulate various levels of present-day human contamination and microbial contamination.

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• 1 year ago - by Anonymous

Software for Kinship coefficient estimation from low coverage ancient (or degraded forensic) genome data. Used to infer relatedness up to the 4th degree from low-coverage ancient human genomes.

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• 1 year ago - by Anonymous

Software package provides Bayesian shrinkage estimators for effect sizes for variety of GLM models, using approximation of posterior for individual coefficients.

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• 1 year ago - submitted by Dongjun Han

Software R package to generate Venn diagram.'ggplot2' implement of Venn Diagram.

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• 1 year ago - submitted by Dongjun Han

Software package that provides client interface to Kyoto Encyclopedia of Genes and Genomes (KEGG) REST API. Client-side REST access to KEGG.

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• 1 year ago - submitted by Dongjun Han

Ubuntu terminal environment on Windows with Windows Subsystem for Linux (WSL). Used to streamline web application development, leverage cutting-edge AI/ML tooling, develop cross-platform applications and manage IT infrastructure without leaving Windows.

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• 1 year ago - submitted by Dongjun Han

Windows Subsystem for Linux (WSL) is feature of Windows operating system that enables to run Linux file system, along with Linux command-line tools and GUI apps, directly on Windows, alongside traditional Windows desktop and apps. Tool for developers, especially web developers, those working on open source projects, or deploying to Linux server environments.

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• 1 year ago - submitted by Dongjun Han

NIDA-IRP Histology and Imaging Core serves NIDA-IRP researchers by providing access to existing and emerging neuroanatomical technologies to map and characterize neuronal circuits. Provides expertiese, consultations and training to NIDA-IRP researchers in the adaptation and execution of neuroanatomical techniques and procedures.

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• 1 year ago - submitted by Edyta Vieth

Biomolecular Research Core Facility (BRCF) has collection of instrumentation for characterization of biomolecules and their role in variety of processes. Instrumentation is accessible to internal and external customers. Available instrumentation focuses on mass spec, histology, imaging, and protein biochemistry.

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• 1 year ago - submitted by Edyta Vieth

Core provides equipment and infrastructure required to conduct advanced genomics research. Provides access to DNA sequencing, traditional Sanger sequencing and genotyping, and additional equipment services for functional genomic assays and mapping. Provides robotics and instrumentation to facilitate the handling of large numbers of samples, as well as many advanced sequencing and sequencing support applications.

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• 1 year ago - submitted by Edyta Vieth

NIDA IRP Confocal and Electron Microscopy Core serves NIDA-IRP researchers by providing access to confocal and electron microscopic technologies to characterize cellular and ultrastructural properties of organelles, tissue culture and brain tissue. Provides expertise, consultations and training in adaptation and execution of confocal and electron microscopic techniques and procedures.

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• SciCrunch
• 1 year ago - submitted by Edyta Vieth

Software application for accurate and rapid prediction of IAV subtypes and host source.

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• 1 year ago - submitted by Hoang-Hai Nguyen

Electronic von Frey system for rodents. Used for touch sensitivity in unrestrained animals. The scientist gradually increases the force applied to the animal paw, until the peak detector scores the animal paw withdrawal (or the user scores it manually with the included pedal).

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• 1 year ago - submitted by Amirah Wright

Cogentech's CGT lab is offering its diagnostic services for Hereditary Tumors (Cancer Risk) and for Personalized Medicine (Therapy) to clinicians, laboratories and hospitals.

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• SciCrunch
• 1 year ago - submitted by Edyta Vieth