Curator Dashboard

Real-Time PCR Instrument, with Sequence Detection System (SDS) Software, is 96-well, 5-color real-time PCR instrument available for in vitro diagnostic use. Based on Peltier block technology, instrument is designed to deliver results, in 96-well format. SDS Software allows full control over thermal cycling protocols to further assist in developing or running custom assays.

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• 1 year ago - submitted by Latifa Nishat

Thermal cycler with flexible configuration and control features. System with Thermo Fisher Connect to design and upload methods and monitor runs from any smartphone or desktop computer. Has five different blocks that can be changed. Blocks allow up to three experiments to be run simultaneously, completely independently of each other and without interference. Dual 96-well and dual 384-well blocks are available for your high-throughput PCR sequencing needs, and dual flat block is available to support Applied Biosystems OpenArray plate technology for genotyping analysis on the Applied Biosystems QuantStudio 12K Flex Real-Time PCR System.

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• 1 year ago - submitted by Latifa Nishat

Compact ultrasonicator for DNA shearing for MiSeq and PGM users. AFA technology in the M220 eliminates operator-induced variations, improves performance, increases efficiency, and provides standardized results.

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• 1 year ago - by Anonymous

Flow cytometer, with its easy-to-use workflow, is full spectrum flow cytometry solution. Instrument incorporates Cytek’s Full Spectrum Profiling technology allowing for wide array of new fluorochrome combinations without reconfiguring your system for each application. Uses SpectroFlo software.The 1-Laser, 2-Laser, and 3-Laser versions of this model are available.

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• 1 year ago - by Anonymous

Leading manufacturer and supplier of flow cytometry products and services. Cytek’s compact, affordable instruments and wide ranging support offerings are used by researchers and clinicians all over the world.

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• 1 year ago - by Anonymous

Stanford University software shared computing cluster. All Stanford researchers have access to base set of managed computing resources, GPU-based servers, and multi-petabyte, high-performance parallel file system for short-term storage.

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• 1 year ago - submitted by Brad Rittenhouse

Software tool for predicting ncRNA-disease associations. Used for identifying association between ncRNAs and diseases.

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• 1 year ago - submitted by Xi Ye Lv

Software retrieval-augmented knowledge mining method with deep thinking LLMs for biomedical research and clinical support. Cross-document question answering dataset addressing current QA limitations, and features Progressive Retrieval-Augmented Reasoning framework that combines advanced retrieval-generation techniques with self-reflection mechanisms and deep-thinking large language models to enhance answer accuracy and contextual relevance.Used to evaluate latent knowledge retrieval and multi-hop reasoning capabilities.

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• 1 year ago - submitted by Yichun Feng

Software package to quality control bulk cancer sequencing data. Used to visualise and manipulate i) somatic mutation data of both single-nucleotide variants and insertion-deletions, ii) allele-specific Copy Number Alterations (CNAs) and iii) tumour purity estimates. Used to validate copy number segmentations against variant allele frequencies of somatic mutations. Provides automatic copy number calling pipeline. Provides also algorithms to phase mutation multiplicities against CNAs and estimate Cancer Cell Fractions (CCFs) with their uncertainty.

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• 1 year ago - by Anonymous

Software application used for processing and editing 3D triangular meshes. Provides tools for editing, cleaning, repairing, inspecting, rendering, texturing, and converting meshes. This makes it suitable for variety of tasks related to 3D data, including preparing models for 3D printing.

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• 1 year ago - by Anonymous

Software repository provides open-source implementation of RGB imaging workflow for morphological and morphometric analysis of fruits and seeds.

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• 1 year ago - by Anonymous

Software tool to convert Virtual Contact File into Mutation Annotation Format, where each variant is annotated to only one of all possible gene isoforms.

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• 1 year ago - by Anonymous

Provides access to imaging technology. Offers combination of both commercial platforms and not-yet commercialized technologies that enable innovative research centered around structural and functional imaging. Optical microscopy and image analysis platform.

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• 1 year ago - by Anonymous

Advanced and adaptable cell sorting system employs Full Spectrum Profiling technology to produce high-quality flow cytometric data along with Cytek portfolio of full spectrum instruments. Aurora CS system is the only commercially available spectral cell sorter that is paired with companion analyzer.

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• 1 year ago - by Anonymous

Thermocycler series with touch screen with precise fingertip control. MC X50 PCR thermocycler enables easy PCR optimization and standardization in routine PCR applications. It is also fitted for NGS.

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• 1 year ago - submitted by Edyta Vieth

Research institute focused on the study of plants at the molecular level.IBMP is a major CNRS center for plant sciences. Located at the Strasbourg site, it collaborates closely with the University of Strasbourg and our international partners in the Upper Rhine Valley region. Conducts research in areas of plant biology, including gene expression and RNA regulation, plant metabolism, organelles, and virology.

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• 1 year ago - submitted by Edyta Vieth

Core provides expertise in biological data analysis especially in high-throughput sequencing data analyses, by developing dedicated tools and workflows. Maintains computational and storage infrastructure in bioinformatics and organizes trainings for biologists and/or bioinformaticians.

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• 1 year ago - by Anonymous

Core provides preclinical imaging and radiation treatment resources for animal research.

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• 1 year ago - by Anonymous

Independent, non-profit research organization in Great Falls, Montana near the Rocky Mountain Front.

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• 1 year ago - submitted by Edyta Vieth

GEMMA Core offers transgenic and genotyping services needed for experiments, phenotyping and behavioral services, and mouse colony management services to COBRE faculty. Consultation and training for lab staff is also available.

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• 1 year ago - by Anonymous