Curator Dashboard

Icahn School of Medicine at Mount Sinai Microscopy and Advanced Bioimaging Core Leica TCS SP8 system is high precision confocal microscope with Acousto-Optical Beam Splitter that allows for flexible control of the excitation and emission light paths.

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• 1 year ago - submitted by Edyta Vieth

Dragonfly spinning disk confocal microscopy system. Andor Dragonfly 600 series high-contrast multi-dimensional imaging platform for live cell imaging. Andor Dragonfly 620 is spinning disk confocal with many advanced modalities capable of widefield imaging, high-sensitivity or high-contrast spinning disk imaging, TIRF (critical angle, Hi-Lo), STORM (single molecule imaging), photostimulation of specific cellular regions and dual-camera recording.

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• 1 year ago - submitted by Edyta Vieth

Software repository provides the code for generalizable machine learning models for rapid antimicrobial resistance prediction in unseen healthcare settings.

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• 1 year ago - by Anonymous

Software toolkit containing lots of useful tools for genomics analyses. Used to check, fix, pad missing information (features/attributes) of any kind of GTF and GFF to create complete, sorted and standardised gff3 format.

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• 1 year ago - by Anonymous

Core to procure and coordinate distribution of fresh frozen human tissue in optimal state of preservation for requesting investigators without impacting diagnostic quality, accuracy and safety in anatomic pathology. Additional services offered include biospecimen DNA or RNA extraction, sectioning of frozen tissues, short-term tissue culture, cytogenetic/molecular cytogenetic analysis, and tissue preparation via investigator-driven protocols.

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• 1 year ago - by Anonymous

Software R package defines S4 classes for single-cell genomic data and associated information, such as dimensionality reduction embeddings, nearest-neighbor graphs, and spatially-resolved coordinates. Provides data access methods and R-native hooks to ensure the Seurat object is familiar to other R users.

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• 1 year ago - by Anonymous

Software R package to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters and markers. Can also be used to read data from .loom files.

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• 1 year ago - by Anonymous

Software package for computing collection of clustering validation or quality criteria and partition comparison indices.

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• 1 year ago - by Anonymous

Software Python package for handling mmCIF and BinaryCIF files compliant with the ModelCIF extension.

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• 1 year ago - by Anonymous

Software pipeline includes metrics of matrix alignment, length, branching, end points, gaps, fractal dimension, curvature, and the distribution of fibre thickness. FIJI macro for quantifying pattern in extracellular matrix.

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• 1 year ago - by Anonymous

System was high-performance gel imaging system for chemiluminescence, fluorescence, UV, and visible light applications, but it has been discontinued as of October 15, 2021. ProteinSimple (now part of Bio-Techne) will continue servicing these products through October 15, 2026.

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• 1 year ago - submitted by Emily Brown

Core advise and assist investigators with advanced microscopy and flow cytometry procedures. Provides training and services in flow cytometry and biological imaging.

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• 1 year ago - submitted by Savannah Britz

University of South Carolina NMR Core.

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• 1 year ago - submitted by Savannah Britz

Core provides services for EI and CI spectra including high and low resolution analyses available; for GC-MS including positive ion and negative chemical ionization, with high resolution and MS/MS available for high sensitivity work; Electrospray and APCI including low resolution or accurate mass analysis of purified compounds by direct infusion or loop injection analysis; MS/MS available for structural analysis;LC-MS including electrospray and APCI ionization available. Separation by narrowbore or capillary HPLC. MS/MS available for quantitation, peptide microsequencing and protein identification, etc.; MALDI-TOF/TOF including analysis of polymers and biomolecules; ICP-MS including trace elemental detection with high resolution. User training available for students and researchers who will be using the instrumentation for extended projects.

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• 1 year ago - submitted by Savannah Britz

Core analytical facility with research focus on geochemistry and chemical oceanography. Provides plasma-source mass spectrometers for trace metal and isotope ratio measurements on wide variety of sample types.

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• 1 year ago - submitted by Savannah Britz

Software tool as long read, high-throughput sequencing and optical mapping structural variant Comparator. Enables to compare structural variants (SVs) from long-read-sequencing (LRS) datasets obtained by all available technologies as well as short-read sequencing (SRS) datasets and optical genome mapping (OGM). Enables to analyse targeted or whole-genome sequencing datasets using reference genome of interest.

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• 1 year ago - by Anonymous

Software tool to analyse coverage depths of structural variants or regions/genes of interest from long-read-sequencing datasets obtained by all available technologies as well as short-read sequencing datasets and optical genome mapping. Generates coverage statistics (min, max, Q1, Q3, mean, median) and/or coverage plots based on either the Binary Alignment Map (BAM) file(s) or OGM mapping files (CMAP, XMAP). Software optical mapping, high-throughput and long read coverage comparison and visualization tool.

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• 1 year ago - by Anonymous

Teaching hospital located in Yeongeon-dong, Jongno-gu, Seoul, South Korea. It is general and teaching hospital of Seoul National University's College of Medicine.

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• 1 year ago - by Anonymous

Software tool to extract low-dimensional deep features from multisequence brain MRI data using unsupervised autoencoders.

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• 1 year ago - submitted by Thomas Barba

Data repository for archiving raw sequence data, which provides data storage and sharing services for worldwide scientific communities. Data repository specialized for human genetic related data derived from biomedical researches.

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• 1 year ago - submitted by Qingyuan Wang