Curator Dashboard

A database of human molecular interaction networks that integrates human protein-protein and transcriptional regulatory interactions from 15 distinct resources and aims to give direct and easy access to the integrated data set and to enable users to perform network-based investigations. The database includes tools (i) to search for molecular interaction partners of query genes or proteins in the integrated dataset, (ii) to inspect the origin, evidence and functional annotation of retrieved proteins and interactions, (iii) to visualize and adjust the resulting interaction network, (iv) to filter interactions based on method of derivation, evidence and type of experiment as well as based on gene expression data or gene lists and (v) to analyze the functional composition of interaction networks.

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• SciCrunch
• 17 years ago - by Anonymous

Open source software R package for inferring large transcriptional networks using mutual information. Implements algorithms for inferring networks such as gene networks from microarray data.

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• RRID-Legacy
• 6 years ago - by Anonymous

Core provides microbial sequencing, high-throughput nucleic acid extraction, microbial cultivation, and strain identification.

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• RRID
• 1 year ago - submitted by Edyta Vieth

The mission of the American Liver Foundation (ALF) is to facilitate, advocate and promote education, support and research for the prevention, treatment and cure of liver disease. These values guide our work as volunteers and staff of the American Liver Foundation as we move toward our ultimate goal of a world without liver disease. By living these values every day, we offer hope to all those affected by liver disease. * Research: Research is integral to the work of American Liver Foundation and is essential to improving treatment and finding cures. * Education: Many forms of liver disease are preventable, and many more can be cured if detected early. Yet tens of thousands of people in the U.S. are living with liver disease and don''t even know it. * Advocacy: American Liver Foundation takes a leadership role in advocating on behalf of the millions of Americans living with liver disease and their families.

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• SciCrunch
• 15 years ago - by Anonymous

SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.

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• RRID-Legacy
• 6 years ago - submitted by Fuxiang Wang

Core provides annotated biospecimens for basic, clinical, and translational research. Helps researchers access, collect, manage, and protect biospecimens using automated processes and quality control. Offers safe and monitored management of biospecimens including temperature-controlled storage, preparation of derivatives from these specimens, aliquoting, distribution, and production of specimen collection kits.

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• RRID
• 1 year ago - submitted by Edyta Vieth

Vector database is a digital collection of vector backbones assembled from publications and commercially available sources. This is a free resource for the scientific community that is compiled by Addgene. Only the plasmids deposited at Addgene are available for purchase through this website.

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• SciCrunch
• 15 years ago - by Anonymous

Open source Python codebase that provides real-time interface between open-hardware devices for electrophysiological recordings like EEG, EMG, and ECG, and analog and digital devices like MIDI, OSC, and analog synthesizers. This allows one to use electrical brain/body activity to flexibly control devices in real-time.

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• RRID-Legacy
• 6 years ago - submitted by Robert Oostenveld

Core facility for synthetic biology experimentation including pilot-scale fermentation, high throughput automation, biological sample analysis, and cell-free protein synthesis.

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• RRID
• 1 year ago - by Anonymous

Bibliography with over 3,800 selected English-language articles, books, and other printed and electronic sources that are useful in understanding scholarly electronic publishing efforts on the Internet. It covers a wide range of topics, such as digital copyright, digital libraries, digital preservation, digital repositories, e-books, e-journals, license agreements, metadata, and open access. It includes Scholarly Electronic Publishing Resources, a selective directory of related Web sites, and the Scholarly Electronic Publishing Weblog, a frequently updated list of new publications and other resources that may be of interest to bibliography readers. Most sources have been published from January 1, 1990 through October 30, 2011; however, a limited number of earlier key sources are also included. The bibliography includes links to freely available versions of included works. It does not include digital media works (such as MP3 files), editorials, e mail messages, letters to the editor, daily newspaper articles, presentation slides or transcripts, or weblog postings. An archive of prior versions of SEPB is available as a downloadable compressed file (.zip) that includes all versions of the bibliography. The Scholarly Electronic Publishing Bibliography 2010 is available as a paperback (466 pages, $18.95, ISBN-10: 1456453289 and ISBN-13: 9781456453282) and an open access PDF file.

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• SciCrunch
• 15 years ago - by Anonymous

Provides data integrity using blockchain. Used for protecting integrity and provenance of research data.Open science chain utilizes distributed ledger technology (consortium blockchain) to securely store information about scientific data including its provenance to enable independent verification of its authenticity to establish trust in the research community.

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• RRID-Legacy
• 6 years ago - by Anonymous

Repository contains PEtab specifications and additional documentation. Data format for specifying parameter estimation problems in systems biology. SBML and TSV based data format for parameter estimation problems in systems biology. Human- and computer- readable format for representing parameter estimation problems in systems biology.

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• RRID
• 1 year ago - by Anonymous

Tool box for arterial spin labeled perfusion MRI data processing. It is based on SPM and Matlab. More detailed documentation can be found in asl_perf_subtract.m, the main function for calculating CBF value. It supports 3D or 4D Analyze or Nifiti format and PASL, CASL, and PCASL data. It contains the code for calculating CBF and a set of SPM batch scripts for preprocessing and statistical analysis.

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• SciCrunch
• 15 years ago - by Anonymous

Provides services, consultation, and collaborations to enable generation, storage and regeneration of genetically altered mice.Services include CRISPR-Cas9 Mouse Editing, Pronuclear Microinjection of DNAs,Sperm or Embryo Cryopreservation,In vitro Fertilization and Rederivation,Genome-Editing Design and Analysis Services.

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• SciCrunch
• 6 years ago - submitted by Edyta Vieth

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 8th,2025. Cogentech's DNA Sanger Sequencing (DSS) Core Facility offers standard DNA sequencing and assistance for projects using on Sanger sequencing. We also offer the possibility to use fragment analysis for various applications, providing assistance in the pre-and post-analytical phase. The laboratory is ISO9001 certified.

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• SciCrunch
• 1 year ago - submitted by Edyta Vieth

A collaborative wiki that collates information on completed, ongoing and planned genome and transcriptome sequencing projects on species from phylum Nematoda. The intention is to encourage genome sequencing across the diversity of the phylum Nematoda. Wiki includes: * Published complete nematode genomes: A dynamically generated table of all species for which the genome is published. * Nematode species with genomes in progress: A dynamically generated table of all species for which a genome project is underway. Users may add species to the list * Proposed nematode genome projects: To propose a species for genome sequencing, edit its species page, and set the genome project status to proposed. * BLAST server: Search a number of the nematode-genomes-in-progress with genes of your choice. Currently there are 12 draft genomes available... * Genomes with Data available: Genomes with data available for download. Users may add more data URLs to strain pages or update the URLs.

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• SciCrunch
• 15 years ago - by Anonymous

Portal for Global Mouse Models for COVID-19 consortium. Presents consortium, its statement and membership, and URLs for mouse COVID-19 resources worldwide.

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• RRID-Legacy
• 6 years ago - submitted by Edyta Vieth

Software R package for estimation of effect size indices and standardized parameters. Used to work with indices of effect size and standardized parameters, allowing computation and conversion of indices such as Cohen’s d, r, odds-ratios, etc.

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• RRID
• 1 year ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 27,2023.Interactive multimedia educational outreach resource promoting awareness and understanding of key microbiological issues to adult and youth audiences, and showcases the significance of microbes in our lives. It is an online community for sharing the latest news, blog posts, videos, podcasts, images, research and resources related to microbiology and the life sciences. Join today and help contribute to the fastest growing networks for science information on the web. The anthrax attacks of 2001 and the ensuing focus on bioterrorism, the potential of viral and bacterial infections for victims of Hurricane Katrina, the emergence of avian flu, and the public''s growing interest in alternative fuel sources have thrust microbes into unprecedented prominence in the headlines. MicrobeWorld informs the public about how science works. The various outreach methods feature the process of discovery, historical changes in research, and a variety of scientific careers in industry, academia, and government. One of the first MicrobeWorld Radio podcasts explained how microbes enter the initially sterile bodies of infants just hours after birth, establishing the microbial communities that stay with them for life. Other topics have included why the overuse of antibiotics is a growing problem, how microbes are key in the making of chocolate, and how microbiologists are on the front line in the war against infectious diseases that threaten human and animal health. Objectives * Leverage emerging communications technologies to promote the science of microbiology to the public and provide educational resources for all levels. * Repurpose the American Society for Microbiology''s resources for the wired generation. * Increase public understanding and appreciation of the vital role microbes play on our planet. * Use new technology to promote ASM''s resources to students, educators and other potential members of the Society. * Establish ASM as a leader in online science content.

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• SciCrunch
• 15 years ago - by Anonymous

Software tool to evaluate and visualize statistical significance of pairwise comparisons of IMGT clonotype (AA) diversity or expression, per variable,diversity, and joining gene of given IG or TR group, from NGS IMGT/HighV-QUEST statistical output. Antibody clonotype analysis based on NGS sequences.

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• RRID-Legacy
• 6 years ago - by Anonymous