Curator Dashboard

Core offers comprehensive protein expression, purification, characterization, and structural biology services, including advanced methods such as Cryo-Electron Microscopy (Cryo-EM) and X-ray Crystallography.

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• SciCrunch
• 9 months ago - submitted by Edyta Vieth

Software integrative pipeline for antimicrobial resistance genes, virulence factors, toxins, and biosynthetic gene clusters prediction in metagenomes. Used for predicting microbiome-based pathogenicity and resistance to better understand and address challenges posed by antimicrobial resistance and infectious diseases.

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• 9 months ago - submitted by Luis Fernando Delgado

Cryo-Electron Microscopy Core facility at ISM offers EM services with state-of art instruments (Vitrobot for sample preparation, Glacios-2 TEM for imaging biological samples at atomic resolution). We offer single particle analysis (SPA) workflow, imaging drug delivery products (ex: liposomes, LNPs, AAVs..)

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• SciCrunch
• 9 months ago - submitted by Edyta Vieth

Integrative database for human proteome structural and functional sites. Used for understanding role of specific residues in protein structures, complexes, and interaction networks. Integrates various structural and functional annotation layers for each residue, offering comprehensive understanding of protein functionality.

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• 9 months ago - by Anonymous

Software R package for most bulk sequencing datasets. Creates shiny app for interactive data analysis and visualisation. Used for analysing and sharing bulk sequencing results.

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• 9 months ago - by Anonymous

Web application for data visualization and data mining system that offers efficient analysis and discovery by integrating big data with intelligent and intuitive functionality.

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• 9 months ago - by Anonymous

Software tool for comprehensive T‐Cell subsets abundance prediction and its application in cancer immunotherapy.

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• 9 months ago - by Anonymous

Core provides complete flow cytometry analysis and cell sorting services in terms of experimental design, instrumentation, training, technical assistance and scientific guidance from sample preparation to publication.

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• 9 months ago - by Anonymous

Core provides access to imaging instrumentation and expertise that is necessary to integrate advanced imaging technologies into basic and translational biomedical research. Services include Assistance in experimental design; Developing specialty equipment and innovative procedures for imaging; Preparing animals for studies, inducing and maintaining appropriate anesthesia and immobilization of animals during imaging;Processing and interpreting data for publication or grant preparation.

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• 9 months ago - by Anonymous

Three-dimensional brain reference atlas based on the RIKEN25v1 MRI-derived template, based on an average of 25 C. jacchus brains resampled to 70 um3 voxel resolution. Includes selected published subcortical parcellations to aid in comparing across parcellation schemes.

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• 9 months ago - submitted by Anita Bandrowski

Three-dimensional brain reference atlas for macaque basal ganglia created based on annotation of BG structures on Mac25Rhesus template, an averaged MRI template from 25 M. Includes selected published subcortical parcellations to aid in comparing across parcellation schemes. Enables mapping of samples and integration of multimodal data within and across species.

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• 9 months ago - submitted by Anita Bandrowski

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• 9 months ago - submitted by Anita Bandrowski

IFGW glass workshop, equipped with specialized staff, provides expertise in glass forming, welding, and cutting of Quartz and Borosilicate, as well as in design and technical drawing.

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• 9 months ago - submitted by Maria Emilia Seren Takahashi

Core produces and supplies liquid helium and nitrogen to the entire IFGW academic community. Laboratory is equipped with helium liquefier from Linde and nitrogen liquefier from Stirling Cryogenics. In addition, it maintains complex support infrastructure essential for production and distribution of cryogenic liquids.

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• 9 months ago - submitted by Maria Emilia Seren Takahashi

IFGW hosts a mechanical workshop that produces precision components for advanced research projects.

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• 9 months ago - submitted by Maria Emilia Seren Takahashi

Software tool for reconstruction of cell spatial organization from single-cell RNA sequencing data based on ligand-receptor mediated self-assembly. Infers cellular spatial organization from scRNA-seq by modeling ligand–receptor-mediated self-assembly. It constructs 3D pseudo-space and quantifies cell–cell interactions for downstream visualization and hypothesis testing.

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• 9 months ago - submitted by 程斐 廉

Software package for flexible spatial reconstruction of single-cell gene expression with optimal transport. Framework for de novo spatial reconstruction of single-cell gene expression. Assigns cells to tissue locations using probabilistic/optimal-transport models, with or without prior marker information, and returns spatial maps and assignment probabilities.

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• 9 months ago - submitted by 程斐 廉

Software tool for assigning single cells from scRNA-seq to spatial transcriptomics coordinates via optimization framework. Supports high-resolution cell/spot alignment, capacity-constrained/domain-aware placement, and outputs per-cell/per-spot assignments and probabilities for downstream visualization and analysis. Used for optimal mapping of scRNA-seq data to spatial transcriptomics data.

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• 9 months ago - submitted by 程斐 廉

Automated sliding microtome with additional capability for cutting large and hard specimens. Offers Choice of manual or mechanized operation, Coaxial specimen orientation and memory function for rapid re-orientation of pre-cut blocks, User-friendly control panel for easy operation, Optional retraction to protect specimen.

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• 9 months ago - by Anonymous

Three-dimensional (3D) common coordinate framework (CCF) and reference atlas that defines the spatial organization of the basal ganglia of the adult human brain.

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• 9 months ago - submitted by Anita Bandrowski