Curator Dashboard

Software bioinformatics tool for Helicobacter pylori genotyping.

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• 8 months ago - submitted by Xiaomin Zhang

Our AJA International, Inc. ATC Orion is a thin film deposition system based on physical ablation of target material by five (2RF/3DC) independently powered magnetron sputter sources. Substrates with maximum diameter of 100mm are load lock transferred to main chamber on Molybdenum substrate holder with variety of features including heating, rotation, Z motion, and RF biasing. Main chamber vacuum system consists of turbo-molecular pump, gate valve, mechanical pump, and 3 vacuum gauges. Quartz crystal monitor may be employed internally for rate calibration. Internal interlocks protect system/user from aberrant power, water, and vacuum states. Labview-based computer control allows for process development and automated sequencing. Physical vapor deposition system that deposits uniform thin films using magnetron sputtering in controlled vacuum environment.

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• 8 months ago - submitted by Texas State CRO

Software deterministic reproducibility evaluation toolkit for biological machine learning pipelines. Implements 18-assertion compliance evaluation across 5 dimensions: explicitness, data provenance, reproducibility, stability, and bounded deployment envelope. Includes synthetic example dataset for reviewer verification without patient data.

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• 8 months ago - by Anonymous

Custom system intended for flexible annealing or chemical vapor deposition processing at temperatures < 1000oC. Process and/or purge gases (Ar, 4%H2 in Ar, N2) are introduced via a manifold into the quartz tube at either atmospheric or sub-atmospheric pressures. The maximum sample size is 60mm (~2").

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• 8 months ago - submitted by Texas State CRO

Software suite for analyzing and visualizing in situ gene expression data produced by Xenium Analyzer. Xenium Ranger provides flexible off-instrument reanalysis of Xenium In Situ data.

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• 8 months ago - by Anonymous

Software Python package for bulk segregant analysis (BSA) and QTL mapping from pooled whole-genome sequencing data. Takes variant call format (VCF) input and produces ranked candidate genomic regions and genes through sliding window analysis with tricube kernel smoothing, Z-score and G-statistic significance testing, and optional snpEff functional annotation. Supports recessive and dominant inheritance modes, multi-sample bulk pooling, and integration with Nextflow and Snakemake workflow managers. Distributed via PyPI, Bioconda, and Docker.

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• 8 months ago - by Anonymous

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• 8 months ago - submitted by Harpreet Kaur

Software R package that provides comprehensive computational pipeline for predicting survival probabilities and risk groups in cancer patients. Includes dedicated modules to perform key steps such as data preprocessing, training/test splitting, and normalization.

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• 8 months ago - submitted by Harpreet Kaur

Software R package to visualize genetic maps and QTL analysis. Provides graphical user interface to integrate, visualize and explore results from linkage and quantitative trait loci analysis, together with genomic information for autopolyploid species. The app is meant for interactive use and allows users to optionally upload different sources of information, including gene annotation and alignment files, enabling the exploitation and search for candidate genes in a genome browser. In its current version, 'VIEWpoly' supports inputs from 'MAPpoly', 'polymapR', 'diaQTL', 'QTLpoly', 'polyqtlR', 'GWASpoly', and 'HIDECAN' packages.

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• 8 months ago - submitted by Cristiane Taniguti

Local desktop and cloud-based bibliometric and network analysis platform offered through a licensed access model.Supports literature-centered bibliometric and scientometric workflows, and it can also be applied to custom datasets with or without associated literature papers, including broader general network analysis use cases.

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• 8 months ago - submitted by Michael David

Core empowers researchers from genomic, clinical, and basic sciences disciplines at Rush and beyond with cutting-edge bioinformatics resources. Provides guided data analysis and hypothesis-driven research, large-scale data analysis, analytical plan development and results interpretation, algorithm and script development for custom data processing. Provides innovative infrastructure tools, including the Research Private Cloud and scalable cloud-based solutions. Services include customized analytical solutions, data storage and management workflows, training and support for bioinformatics tools.

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• 8 months ago - submitted by Ankur Naqib

Core is CAP/CLIA-certified facility offering comprehensive next generation sequencing (NGS) and bioinformatics services. Supports flexible workflows from nucleic acid extraction and library preparation to sequencing and custom data analysis. Services include DNA/RNA extraction, quality checks, various types of RNA/DNA library prep, NGS, methylation, proteomics (Illumina IPP), metabolomics, lipidomics, pharmacogenomics, and microarray analysis, with options for end-to-end or modular support. Advanced instrumentation includes Illumina NovaSeq X Plus and 6000 platforms, MiSeqDX, Hamilton , Eppendorf, and Tecan liquid handlers, automated extraction systems, and more. HTGC also provides clinical-grade sequencing.

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• 8 months ago - by Anonymous

Core facilitates all aspects of histopathology including processing, embedding, sectioning, histochemical staining, tissue microarray building, immunohistochemistry, in situ hybridisation, whole slide scanning, and image analysis.

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• 8 months ago - by Anonymous

National facility providing advanced automated chemical and genetic in vivo screening for researchers, utilizing zebrafish embryos for studying disease mechanisms. Dedicated zebrafish-focused research imaging and screening facility adapting and developing cutting edge edge microscopy for automated multiscale imaging.

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• 8 months ago - by Anonymous

Web-based application to trace tumor tissue of origin in primary and metastasized cancers.

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• 8 months ago - submitted by Lucas Salas

Software DNA methylation-based algorithm, to estimate cell proportions in tumor microenvironment. Profiles tumor, immune, and angiogenic components, allowing researchers to study tumor composition and its clinical implications using archival biospecimens.

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• 8 months ago - submitted by Lucas Salas

Software used for live streaming and high-quality screen recording on Windows, Mac, and Linux. Allows to capture, mix, and arrange multiple audio/video sources—such as webcams, desktop screens, and games—in real-time to create, broadcast, or record customized video content. Cross-platform screencasting and live streaming software application.

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• 8 months ago - by Anonymous

Free, secure cloud-based service used to impute missing genetic variants in human DNA data, primarily for genome-wide association studies (GWAS). It uses a massive, diverse reference panel of deeply sequenced human genomes to predict missing genotypes, significantly increasing genetic coverage and improving accuracy, particularly for rare variants. It leverages the Trans-Omics for Precision Medicine (TOPMed) panel, which includes over 400 million variants, allowing researchers to boost their genomic data from millions of SNPs to tens of millions.

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• 8 months ago - by Anonymous

Web tool for calculating Linkage Disequilibrium between variants using genotypes from selected population. We only support LD calculation for variants for which we have genotypes from at least 40 samples in the selected population. At the moment we only have sufficient amounts of genotype data from the 1000 Genomes project for human.

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• 8 months ago - by Anonymous

Uganda largest and oldest institution of higher learning, first established as a technical school in 1922, and the oldest currently active university in East Africa. It became an independent national university in 1970.

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• 8 months ago - submitted by Edyta Vieth