Curator Dashboard

Software toolkit of a collection of scripts in which short reads (paired or unpaired), a fasta containing the sequences of transposable elements and a reference genome sequence, are the input and the output is a series of files containing the locations of TE insertions in the reference and short reads.

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• SciCrunch
• 12 years ago - by Anonymous

Software package written in Java for analysis of high-throughput sequencing data of transposon mutant libraries.Reads the alignment and the gene annotation, and provides the user with set of tools to investigate data and identify possibly essential or advantageous genes as those that contain significantly low counts of transposon insertions.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

A project constructing a community inventory and knowledge base on geoscience information resources to meet the challenge of finding resources across disciplines, assessing their fitness for use in specific research scenarios, and providing tools for integrating and re-using data from multiple domains. The project team envisions a comprehensive system linking geoscience resources, users, publications, usage information, and cyberinfrastructure components. This system would serve geoscientists across all domains to efficiently use existing and emerging resources for productive and transformative research.

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• SciCrunch
• 14 years ago - by Anonymous

Statistical software for ROC curve analysis. MedCalc performs several statistical tests such as method comparison, method evaluation, reference intervals, and meta-analysis.

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• dkNET
• 10 years ago - submitted by Maryann Martone

Web tool for RNA subcellular localizations analysis. RNALocate v2.0 is updated resource for RNA subcellular localization with increased coverage and annotation.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

This matlab script and associated files will take resultant statistical images and essentially output everything you could ever want to know. It can work off of images that were previously corrected for multiple comparisons, but it can actually do the correction itself. This is because the cluster_correct script is incorporated within. It will iterate through atlases (borrowed from other software) to tell you the location of significant results. It outputs an extremely detailed report as well as a summary table for quick investigation. In addition, it will output statistics for each surviving cluster, and the image as a whole. Feedback would be much appreciated.

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• SciCrunch
• 14 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 27,2023. Core that provides services for genetic and genomic analysis, including DNA extraction from blood, access to DNA collections from the Core?s repository, SNP genotyping, and support for gene expression studies based on both high-density oligonucleotide arrays and real-time quantitative PCR.

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• SciCrunch
• 13 years ago - by Anonymous

Core supports high performance computing and data management needs of UBC researchers by providing consultation, expertise, and access to digital research infrastructure such as high performance computing clusters and storage.

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• RRID
• 3 years ago - by Anonymous

Software package that quantifies the similarity of cell populations across multiple flow cytometry samples using a nonparametric multivariate statistical test. The algorithm allows the users to specify a reference sample for comparison or to construct a reference sample from the available data. The output of the algorithm is a set of text files where the cell population labels are replaced by a metaset of population labels, generated from the matching process.

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• SciCrunch
• 12 years ago - by Anonymous

Core dedicated to promoting and integrating health information technology into every day health care settings. These technologies include data networks, surveillance of patterns of diabetes care, and management tools for diabetic populations.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Web server predicts functional impact of amino-acid substitutions in proteins, such as mutations discovered in cancer or missense polymorphisms. Functional impact is assessed based on evolutionary conservation of affected amino acid in protein homologs., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

An electronic archive for self-archive papers in any area of Psychology, neuroscience, and Linguistics, and many areas of Computer Science, Philosophy, Biology, Medicine, Anthropology, cognitive ethnology, archeology, paleontology, as well as any other portions of the physical, social and mathematical sciences that are pertinent to the study of cognition.

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• SciCrunch
• 17 years ago - by Anonymous

Software tool used to carry out statistical selection of best-fit models of nucleotide substitution without the aid of PAUP*. It implements five different model selection strategies: hierarchical and dynamical likelihood ratio tests, Akaike and Bayesian information criteria, and a decision theory method. It also provides estimates of model selection uncertainty, parameter importances, and model-averaged parameter estimates.

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• RRID-Legacy
• 10 years ago - by Anonymous

Interdisciplinary laboratory designed for study of human subjects.Lab resources are available to all Stanford GSB faculty and PhD students to support research that uses human participants, whether your focus is organizational behavior, behavioral marketing, political economics, or behavioral economics.Assists with research by programming study, posting study to one or more of the available subject pools, paying participants, running participants through experiments in the lab, or creating study materials.Engages with faculty members and doctoral students in preparing and carrying out human subjects research, both in-person laboratory experiments and online survey research.Provides expert consultation on behavioral experiments, and implementations of technology in behavioral research, such as eye-tracking, psychophysiology, and other specialized technology used in research with human subjects.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Wikipedia offers a comparison of web annotation systems. Many of these systems require software to be installed to enable some or all of the features. This fact is only noted in footnotes if the software that is required is additional software provided by a third party.

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• SciCrunch
• 17 years ago - by Anonymous

Core which supports the work of the Baltimore Polycystic Kidney Disease research center by providing antibody validation services and vectors to researchers.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Provides clinical and pre-clinical radiotracers for understanding and detecting cancer, cardiac conditions, inflammatory disorders, and neurodegenerative diseases.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

An integrated set of tools for measuring cognitive, emotional, motor and sensory function. These tools are being validated for use in diverse cultures, ethnic and geographic groups, ages (3-85 years) and study types. The toolbox is expected to provide a more complete picture of neurological and behavioral health in large-scale longitudinal studies, epidemiological studies, and clinical trials; and to facilitate cross-study comparisons. Moreover, the toolbox will: * be minimally burdensome to subjects and investigators, * utilize state-of-the art psychometric approaches and technology, including computer-assisted evaluation, and * be dynamic and adaptable to changes in measurement and technology. * be available in English and Spanish Many clinical studies collect data on aspects of neurological and behavioral function. However, the neurological and behavioral tests currently available to researchers lack uniformity and often require specialized training to administer. These limitations make it difficult to compile data across the full range of normal neurological function, and to compare data across studies. The toolbox is royalty-free and is expected to be available online by summer 2012.

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• SciCrunch
• 15 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE.Documented on July 27,2022. Scientific imaging service that serves as a centralized facility for imaging and visualization. The core facility provides access to time lapse and 3-D microscopy and quantitative autoradiography.

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• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Provides medical care, in vivo research support, and disease surveillance to laboratory animals at Stanford University . Our board certified and board eligible veterinarians offer consultation in appropriate animal modeling, animal care techniques, experimental methodology, anesthetic techniques, surgical techniques, pain management, humane euthanasia techniques, and animal use (APLAC) protocol consultation. AALAS certified veterinary technicians are available to provide technical support including dosing, biosampling, conducting anesthesia and post-operative care, for example.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth