Curator Dashboard

Software standardized framework for creating, sharing, and reusing cognitive and clinical assessments. Standardized form generation and data collection schema to harmonize results by design across projects. Used for enhancing research reproducibility through standardized survey data collection.

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• dkNET
• 7 months ago - submitted by Maryann Martone

Open source software ecosystem designed to facilitate harmonization, search, and discovery of neuroimaging study cohorts across decentralized datasets. Allows researchers to find participants across different studies based on specific clinical, demographic, and imaging criteria without needing to merge all the original data into a single central database. Provides tools to connect a local neuroimaging dataset with others in decentralized framework using linked data principles.You can contribute to Neurobagel by enhancing its tools (annotation, querying), improving documentation, adding new features/models, fixing bugs, or sharing your own data/expertise to help researchers find and harmonize brain imaging cohorts through standardized metadata and knowledge graphs.

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• dkNET
• 7 months ago - submitted by Maryann Martone

Shipping Dewar Positional Cooling Device (SDPCD) is 3-D printable vertical cooling device that can assist cryopreservation with various standard cooling rates by use with existing standard nitrogen vapor shipping dewars for on-site sperm cryopreservation for aquatic species.Device could hold 22 French straws (0.25-mL or 0.5-mL) and a quick-release ring design could eject straws directly into a canister inside a dewar by pressing a button after freezing. The final prototypes produced cooling rates of 1 to 68°C/min for 0.25-mL straws, and 3 to 37°C/min for 0.5-mL straws with a material cost of 3.5 USD for a single device

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• RRID
• 7 months ago - by Anonymous

Software video analysis and modeling tool developed within the Open Source Physics (OSP) Java framework. Allows frame-by-frame tracking of anatomical landmarks and articulated structures from video recordings, enabling the extraction of time-dependent kinematic variables such as displacement, velocity, and acceleration. Tracker is well suited for biomechanical analyses of articulated systems, as it supports joint-based rotations, reference-frame definition, and the export of quantitative motion data for further post-processing.

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• RRID
• 7 months ago - by Anonymous

Software program from Microchip, serving as a comprehensive, expandable platform for developing Microchip microcontroller applications, with many integrated tools like MPLAB Code Configurator (MCC) and MPLAB XC Compilers (free versions). Incorporates tools to discover, configure, develop, debug and qualify embedded designs for most of microcontrollers and digital signal controllers. MPLAB X IDE works seamlessly with the MPLAB development ecosystem of software and tools.

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• RRID
• 7 months ago - by Anonymous

Software MATLAB-based application for spike sorting multi-electrode array (MEA) recordings. Used for efficient, reproducible spike sorting in high-throughput neuronal culture experiments. SAMS performs batched automated spike sorting processes and also allows the users to review and correct any clusters or spike assignments.

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• RRID
• 7 months ago - submitted by Raymond Doudlah

College of American Pathologists-accredited biorepository that collects, processes, securely stores, and distributes human biospecimens (tissues and blood products) for medical research. Tissue Bank that is a CAP-accredited biorepository supporting four human consent programs. Provides fresh and frozen tissue and biological materials with known preanalytical variables to researchers as well as provides specialized processing and imaging services.

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• RRID
• 7 months ago - submitted by Karlie Sippel

MRI scanner as medical imaging system used for detailed scans of the brain, spine, joints, heart, and other organs, focusing on high image quality, fast scans (using technologies like HyperSense), enhanced patient comfort (with Silent Suite for noise reduction and free-breathing options), and operational efficiency, making it suitable for diverse clinical needs like neuroimaging, orthopedics, and cardiovascular studies. It's designed to handle a broad range of applications and improve workflow, even for patients with MRI-conditional metal implants.

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• RRID
• 7 months ago - submitted by Ariel Graff

Platform provides suite of powerful tools to explore, visualize, and make sense of complex data that can help accelerate discoveries in melanoma research. By integrating data from multiple studies, including transcriptiomics, single-cell RNA-Seq, and proteomics (with more to come), MelOD allows for comprehensive examination of the molecular landscape of melanoma.

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• RRID
• 7 months ago - by Anonymous

Duplicate record. A simple and easy-to-use electrophysiological data analysis toolkit developed by Quanlan Technology for beginner neuroscience iresearchers and clinical electrophysiologists.

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• RRID
• 7 months ago - submitted by huayun wu

Software electrophysiological data analysis toolkit developed by Quanlan Technology for beginner neuroscience researchers and clinical electrophysiologists.

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• RRID
• 7 months ago - submitted by huayun wu

Open data resource for mapping brain development and its associations with mental health. Integrates data from 5 large studies of brain development in youth from three continents (N = 6,346). Bifactor models were used to create harmonized psychiatric phenotypes, capturing major dimensions of psychopathology. Neuroimaging data were carefully curated and processed using consistent pipelines in a reproducible manner.

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• dkNET
• 7 months ago - submitted by Maryann Martone

Open source resource of manually curated and expert reviewed infant brain segmentations hosted on OpenNeuro.org. and OSF.io. Anatomical MRI data was segmented from 71 infant imaging visits across 51 participants, using both T1w and T2w images per visit. Images showed dramatic differences in myelination and intensities across 1–9 months, emphasizing the need for densely sampled gold-standard segmentations across early life. This dataset provides a benchmark for evaluating and improving pipelines dependent upon segmentations in the youngest populations. As such, this dataset provides a vitally needed foundation for early-life large-scale studies such as HBCD.

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• dkNET
• 7 months ago - submitted by Maryann Martone

Software graphical and containerized spatial proteomics workflow. End-to-end containerized spatial proteomics analysis workflow with QuPath integration. Consists of cell segmentation, batch correction, unsupervised clustering, validation of clusters on the image, and cell type clustering results visualization.

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• RRID
• 8 months ago - submitted by Ka Yee Yeung

Software R package to identify mutually exclusive mutations. Used to identify mutually exclusive genomic events. Implements exact and approximate computations of the Poisson-Binomial.

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• RRID
• 8 months ago - by Anonymous

Device for 2 kHz eye/gaze-tracking solution supporting both monocular and binocular tracking with single mechanical configuration. Interchangeable lenses support tracker distances from 60 cm to over 160 cm for fMRI applications. TRACKPixx3 does not require a dedicated PC to process eye images and generate gaze information. All image processing is performed within TRACKPixx3 hardware. Gaze data can be logged within the TRACKPixx3 and retrieved by the testing PC with a simple low-latency USB interface. TRACKPixx3 video feed can be accessed directly through a console display for real-time visualization and adjustment of the tracker. These video feeds can also be accessed through the USB interface for remote control of the TRACKPixx3.

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• RRID
• 8 months ago - submitted by Lindsey Fraser

Software application for vendor-neutral, open-source acquisition and reconstruction protocols for fully harmonized multi-site functional MRI studies.

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• 8 months ago - by Anonymous

database of the research

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• 8 months ago - by Anonymous

Software framework that adapts and extends existing methods and knowledge to study cell-cell communication in single-cell, spatially-resolved, and multi-modal omics data. All-in-one framework for cell-cell communication inference.

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• RRID
• 8 months ago - by Anonymous

Software package to facilitate inference of tree-shaped trajectories from single-cell data. These include linear, bifurcating, multifurcating, and other tree-shaped trajectories. Totem uses Slingshot to find linear curves through the lineages of the tree.

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• RRID
• 8 months ago - by Anonymous