Curator Dashboard

Collection of comprising deidentified health related data associated with patients who stayed in critical care units of Beth Israel Deaconess Medical Center between 2001 and 2012. Database includes information such as demographics, vital sign measurements made at bedside (~1 data point per hour), laboratory test results, procedures, medications, caregiver notes, imaging reports, and mortality (both in and out of hospital).

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Software package of open-source graph visualization tools. Provides also libraries for software applications to use the tools. Provides a way of representing structural information as diagrams of abstract graphs and networks.

• Resource
• RRID
• 2 years ago - submitted by Fahim Imam

DISCO is an information integration approach designed to facilitate interoperation among Internet resources. It consists of a set of tools and services that allows resource providers who maintain information to share it with automated systems such as NIF. NIF is then able to harvest the information and keep those sets of information up-to-date. How is this accomplished? By using a series of files and/or scripts which are then placed in the root directory of the resource developer''s resource. (NIF can also host the files on its servers and crawl for changes there.) Once the files of the resource providers are in place, and DISCO is notified, the DISCO server can then recognize and consume the information shared, providing machine understandable information to NIF Integrator Servers (also known as Aggregators) about your resource. What can DISCO do for my resource? * Inform search engines about your resource and keep your NIF Registry resource description up-to-date. * Expose your data (semi-structured datasets or fields within your structured database) through NIF''s Data Federation you choose what data will be shared. * Create links from an NCBI database (e.g., PubMed, Protein, Nucleotide, etc.) to your data records in NIF using Entrez LinkOut. * Advertise your terminology or ontological information. * Share your resource''s news with the NIF community., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• SciCrunch
• 16 years ago - by Anonymous

IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis Yun-Ching Chen, Abhilash Suresh, Chingiz Underbayev, Clare Sun, Komudi Singh, Fayaz Seifuddin, Adrian Wiestner, Mehdi Pirooznia. doi: https://doi.org/10.1101/596817 MIT license: https://opensource.org/licenses/MIT

• Resource
• SciCrunch
• 7 years ago - submitted by Mehdi Pirooznia

Software package called illustrator of biological sequences. Can be used for representing organization of either protein or nucleotide sequences. Multiple options are provided, and biological sequences can be manipulated, recolored or rescaled in user-defined mode. Final representational artwork can be directly exported into publication-quality figure. Used as illustrator for presentation and visualization of biological sequences. Standalone package was implemented in JAVA, while the online service was implemented in HTML5 and JavaScript. Both the standalone package and online service are freely available

• Resource
• RRID
• 1 year ago - submitted by Shunhua Long

The Yerkes National Primate Research Center of Emory University is an international leader in biomedical and behavioral research. For more than seven decades, the Yerkes Research Center has been dedicated to advancing scientific understanding of primate biology, behavior, veterinary care and conservation, and to improving human health and well-being. The Yerkes Non-Human Primate Resource at Coriell includes viable and contaminant-free Pan troglodytes cell cultures and high quality DNA samples derived from these cultures, both subjected to rigorous quality control.

• Resource
• SciCrunch
• 16 years ago - by Anonymous

Portal for Twins Research Australia. Brings twins and researchers together for vital health research in twins.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Provides support to experiments that use mouse models to elucidate mechanisms of normal physiology and disease processes, and to develop and test novel agents and therapies to treat diseases. Provides centralized facililty for breeding, genotyping, maintaining colonies, conducting animal experiments, collecting tissues, analyzing experimental results, and training personnel in proper procedures for conducting animal experiments. Core also hosts germ-free mouse facility that works with PI's to produce, distribute, and conduct experiments in germ-free and gnotobiotic mouse models. MEF/GCF offers expertise with genetic, induced, or orthotopic models of disease and coordinates with other USC Cores with respect tissue processing and preparation for various types of analyses.

• Resource
• RRID
• 1 year ago - submitted by Savannah Britz

The Systems Biology Graphical Notation (SBGN) project aims to develop high quality, standard graphical languages for representing biological processes and interactions. Each SBGN language is based on the consensus of the broad international SBGN community of biologists, curators and software developers. Over the course of its development many individuals, organizations and companies made invaluable contributions to the SBGN through participating in discussions and meetings, providing feedback on the documentation and worked examples, adopting the standard and spreading the word. Circuit diagrams and Unified Modeling Language diagrams are just two examples of standard visual languages that help accelerate work by promoting regularity, removing ambiguity and enabling software tool support for communication of complex information. Ironically, despite having one of the highest ratios of graphical to textual information, biology still lacks standard graphical notations. The recent deluge of biological knowledge makes addressing this deficit a pressing concern. Toward this goal, we present the Systems Biology Graphical Notation (SBGN), a visual language developed by a community of biochemists, modelers and computer scientists. SBGN consists of three complementary languages: process diagram, entity relationship diagram and activity flow diagram. Together they enable scientists to represent networks of biochemical interactions in a standard, unambiguous way. We believe that SBGN will foster efficient and accurate representation, visualization, storage, exchange and reuse of information on all kinds of biological knowledge, from gene regulation, to metabolism, to cellular signaling. A list of software packages known to provide (or have started to develop) support for SBGN notations is available.

• Resource
• SciCrunch
• 16 years ago - by Anonymous

Database supports use of mouse model system for human cancer by providing comprehensive resource for data and information on various tumor models.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Ethan Badger

Website for predicting the subtype of triple negative breast cancer sample based on its gene expression profile.

• Resource
• RRID
• 1 year ago - by Anonymous

A multiple-sample, technology-aware SNP and indel caller.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Project is providing critical tools for understanding gene function and genetic causes of human diseases. Project KOMP is focused on generating targeted knockout mutations in mouse ES cells. Second phase, KOMP2, relies upon successful generation of strains of knockout mice from these ES cells. Information from JAX about their contributions to KOMP project.

• Resource
• SciCrunch
• 15 years ago - by Anonymous

Software platform-independent application written in Java and R that provides both Graphical User Inteface and command-line interface to facilitate quality control of alignment sequencing data and its derivatives like feature counts. Used for advanced multi-sample quality control for high-throughput sequencing data.

• Resource
• RRID
• 1 year ago - submitted by Ekaterina Serebrovskaya

The LREC conference has become a major event in the field of language engineering, and constitutes a milestone in the life of Human Language Technologies (HLT). The International Conference on Language Resources and Evaluation is organized by ELRA biennially with the support of institutions and organizations involved in HLT, and brings together a large number of people working and interested in HLT.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

Software package provides interface from R to JAGS library for Bayesian data analysis. Program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Test of resource submission

• Resource
• RRID
• 1 year ago - submitted by Jeffrey Grethe

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. An autopsy-based, research-devoted brain bank, biobank and biospecimen bank that derives its human donors from the Arizona Study of Aging and Neurodegenerative Disease (AZSAND), a longitudinal clinicopathological study of the health and diseases of elderly volunteers living in Maricopa county and metropolitan Phoenix, Arizona. Their function is studied during life and their organs and tissue after death. To date, they have concentrated their studies on Alzheimer's disease, Parkinson's disease, heart disease and cancer. They share the banked tissue, biomaterials and biospecimens with qualified researchers worldwide. Registrants with suitable scientific credentials will be allowed access to a database of available tissue linked to relevant clinical information, and will allow tissue requests to be initiated., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

National research consortium designed to discover and perform preliminary characterization of range of molecular transducers that underlie effects of physical activity in humans. Used to study molecular changes that occur during and after exercise and to advance understanding of how physical activity improves and preserves health. Six year program into mechanisms of how physical activity improves health and prevents disease led by NIH Office of Strategic Coordination, National Institute of Arthritis and Musculoskeletal and Skin Diseases, National Institute of Diabetes and Digestive and Kidney Diseases, National Institute on Aging, and National Institute of Biomedical Imaging and Bioengineering.

• Resource
• dkNET
• 7 years ago - submitted by Ko-Wei Lin

Micro and nanofabrication facility that offers range of processing and packaging capabilities including lithography, wet and dry etching, thin film deposition, dicing, wire bonding, metrology, and inspection.

• Resource
• SciCrunch
• 1 year ago - submitted by Edyta Vieth