Curator Dashboard

Dictyostelium discoideum is a great organism to use to teach cellular biology. It exhibits very interesting behaviors, such as chemotaxis and phagocytosis, that can readily be studied in standard laboratories without the need for expensive equipment. Lists of labs being used in real courses settings and all necessary information for performing those experiments are provided. Major headings: * Dictyostelium cell biology course, by Dr. David Knecht, University of Connecticut * Dictyostelium cell biology, by Dr. Derrick Brazill, Hunter College, New York * Report on the number of cells in a slug, contributed by John Bonner * Practical on chemotaxis, by Dr. Thierry Soldati, University of Geneva * Comments from Researchers * References suggested by contributors

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• SciCrunch
• 16 years ago - by Anonymous

Software annotation tool for audio and video recordings. Annotation can be sentence, word or gloss, comment, translation or description of any feature observed in media. Annotations can be created on multiple layers. Tiers can be hierarchically interconnected. Annotation can either be time-aligned to media or it can refer to other existing annotations. Content of annotations consists of Unicode text and annotation documents are stored in XML format (EAF).

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• RRID-Legacy
• 5 years ago - by Anonymous

Core for advanced materials characterization, micro/nanoscale manufacturing, and bioengineering research. NERCF provides open access to more than 20 state-of-the-art research instruments, technical consultation, user training, and collaborative research support for investigators from academia, government laboratories, industry, and external institutions. Major capabilities include scanning electron microscopy, focused ion beam, X-ray computed tomography, metal additive manufacturing, atomic force microscopy, nano-IR spectroscopy, optical profilometry, and mechanical characterization. By integrating advanced manufacturing with multimodal characterization, NERCF supports interdisciplinary research, workforce development, and innovation across Nebraska and beyond.

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• SciCrunch
• 2 months ago - submitted by Edyta Vieth

Evaluates disease-causing potential of sequence alterations.

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• SciCrunch
• 13 years ago - by Anonymous

StemCore Laboratories is a high-throughput genomics facility within the Ottawa Hospital Research Institute (OHRI). Core is capable of facilitating large-scale scientific research and biotechnology projects.Provides infrastructure for genomics, bioinformatics, and proteomics.

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• SciCrunch
• 14 years ago - by Anonymous

Public university located in College Station, Texas, USA.

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• SciCrunch
• 17 years ago - submitted by Andrea Stagg

An algorithm that allows researchers to identify transcript factor binding sites from paired-end sequencing reads. SIPeS uses a dynamic baseline directly through the piling up of fragments to effectively find peaks, overcoming the disadvantage of estimating the average length of DNA fragments from singled-end sequencing achieving more powerful prediction binding sites with high sensitivity and specificity.

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• SciCrunch
• 13 years ago - by Anonymous

Facility provides access to high performance computing environment, BioHPC, which includes both hosted hardware and shared machines. Provides consulting and collaborations for Bioinformatics analysis and workflows.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Core provides expertise in Next Generation Sequencing (NGS) technologies to provide users with full spectrum of genomic services, including microarray analysis (ie genotyping and methylation arrays), NGS library preparation, short-read and long-read sequencing, genotyping.

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• RRID
• 1 month ago - submitted by Edyta Vieth

A free software for Mac OS X which designs long oligos for DNA microarrays, primers for PCR, siRNAs, and more��

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• SciCrunch
• 13 years ago - by Anonymous

Core specializes in oral microbial genomics, taxonomy, phylogenetics and the next generation sequence (NGS) data analysis with both in house and cloud high performance computational resource. In addition to supporting funded bioinformatics projects, Bioinformatics Core will also provide computational support to Forsyth and other researchers for processing, analyzing, and interpreting biological data.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Web-based and standalone application that facilitates multi-omics data visualization, exploration, integration, and analysis by providing easy access to dedicated and interactive protocols. It implements classical ordination techniques and the inference of omics-based (multilayer) networks to mine complex biological systems, and identify robust biomarkers linked to specific contextual parameters or biological states.

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• RRID
• 1 month ago - submitted by Florian Johann Gustav Waleczek

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• SciCrunch
• 15 years ago - submitted by Andrea Stagg

Software R package used to karyoplots. Bioconductor package to plot customizable genomes displaying arbitrary data.

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• RRID-Legacy
• 5 years ago - submitted by Santosh Kumar

Human and Mammalian Brain Atlas (HMBA) is a comprehensive, multi-omic project under the BRAIN Initiative Cell Atlas Network (BICAN) designed to map whole-brain cell types, structures, and cross-species evolutionary relationships across humans and model mammals. Its First Major Release specifically focuses on the Basal Ganglia (BG), establishing a foundational baseline before expanding to the entire brain. Provides detailed, multi-modal reference map that classifies cell types and structures in the basal ganglia across humans and non-human primates.

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• RRID
• 1 month ago - submitted by Anita Bandrowski

Conducts world class collaborative research dedicated to finding cures for human disease, improving quality of life, and thus creating a legacy for its employees, partners, donors, and community. SBP is dedicated to discovering the fundamental molecular causes of disease and devising the innovative therapies of tomorrow. Has established major research programs in cancer, neurodegeneration, diabetes, and infectious, inflammatory, and childhood diseases. SBP is a U.S.-based, non-profit public benefit corporation, with operations in San Diego (La Jolla) and Orlando (Lake Nona) in Florida.

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• SciCrunch
• 17 years ago - submitted by Andrea Stagg

Center maintains database containing all phenotypical data collected by Research Projects and Ancillary collaborators, as well as RNAseq and genotype data.Provides access to data generated by NIDA center for genetic studies of drug abuse in outbred rats and additional research projects that use N/NIH heterogeneous stock (HS) outbred rats and Center’s core services that support genotyping and analysis.Alignes data generated in HS rats with FAIR (Findable, Accessible, Interoperative, Reusable) data management principles.Provides structured access to data associated with research papers produced by research projects that use HS rats.

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• RRID-Legacy
• 5 years ago - submitted by Anita Bandrowski

Software Python command-line tool for auditing control-associated prediction in pooled variant-effect screens. Starting from prepared residue-level and variant-condition matrices, it provides matched prediction with and without control features, direction-level predictive attribution, rank-aware representation geometry, partition comparisons, and equal-feature predictability scoring. Outputs include split-level results, execution parameters, and checksums.

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• SciCrunch
• 1 month ago - by Anonymous

Software for searching DNA sequence databases for RNA structure and sequence similarities.

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• SciCrunch
• 13 years ago - by Anonymous

Core is registered in resources database of German Research Foundation under number RI_00444. Center origins in Medical Physics group, Dept. of Radiology, University Medical Center Freiburg, one of leading group in field of methodological developments in Magnetic Resonance Imaging and Spectroscopy and its application in clinics and research.Serves as platform for collaborations with partners in industry and research according to industrial quality and performance standards. Main branches of MRDAC include development of novel MR sequences and methods and design, implementation, and execution of pharmaceutical MR studies.Offers services such as teaching, training, and consulting.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth