Curator Dashboard

Software R package for functional enrichment on genomic regions. Functional enrichment analysis directly performed on genomic regions.

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• 5 months ago - by Anonymous

Software application for de novo identification and extraction of differentially methylated regions (DMRs) from the human genome using Whole Genome Bisulfite Sequencing (WGBS) and Illumina Infinium Array (450K and EPIC) data. Provides functionality for filtering probes possibly confounded by SNPs and cross-hybridisation. Includes GRanges generation and plotting functions.

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• 5 months ago - by Anonymous

Software application for simultaneous genetic and epigenetic inference in bulk and single-cell studies. Used to perform alignment, DNA methylation and mutation calling, and allele specific methylation from bisulfite sequencing data. Analyzing sodium bisulfite conversion-based DNA methylation/modification data.

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• 5 months ago - by Anonymous

Software R package for reference sequence checksums for provenance identification in RNA-seq. Performs numerous annotation and metadata gathering tasks on behalf of users during the import of transcript counts and abundance from quantification tools such as salmon. Data are imported as SummarizedExperiment objects with associated GenomicRanges metadata. Correct metadata is added automatically via reference sequence digests, facilitating genomic analyses and assisting in computational reproducibility.

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• 5 months ago - by Anonymous

Specialized research and graduate training university in Quebec, Canada, founded in 1969. It is the only institution in Quebec dedicated exclusively to graduate studies (master's and doctoral level) and applied research in four key strategic sectors: water/environment, energy/materials/telecommunications, urbanization/culture, and health/biotechnology.

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• 5 months ago - submitted by Edyta Vieth

Canadian national user facility located at INRS-EMT in Varennes, Quebec, designed to develop and apply high-power, ultrafast lasers for advanced scientific research. It produces intense, synchronized light pulses spanning from THz to hard X-rays for dynamic imaging, materials science, and medical applications. Home of the most powerful laser in Canada with 750 TW and high repetition rate laser systems to explore novel phenomena in matter with ultrafast tools.

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• 5 months ago - submitted by Heide Ibrahim

Facility supporting analytical needs for materials. Provides advanced facilities and equipment for materials characterization, surface, optical and structural analysis, elemental composition, and high-resolution electron microscopy. The center supports materials analysis across a broad range of scientific disciplines, including physics, chemistry, life sciences, earth and space sciences, environmental sciences, and engineering. Offers electron microscopy, X-ray diffraction, ICP-MS, spectroscopy, and related techniques.

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• 5 months ago - by Anonymous

Compact, benchtop whole-slide scanner designed for high-speed, high-resolution digitization of glass slides, primarily used in research pathology, education, and tele-pathology. It converts slides into digital images (NDPI format) for viewing, analysis, and archiving, offering Z-stack imaging for thick tissues and optional fluorescence capabilities.

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• 5 months ago - submitted by Edyta Vieth

Specialized, collaborative unit providing bioinformatics, biostatistics, and data analysis services to researchers across Kentucky. It enhances biomedical research capacity through expert support in experimental design, grant application assistance, and high-throughput data analysis, primarily serving faculty and students at member institutions.

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• 5 months ago - submitted by Eric Rouchka

TGem Ultra is an all-in-one full-wavelength ultraviolet-visible spectrophotometer with a wavelength range of 185-910 nm. The base can detect trace samples of 0.5–2 µl with very high accuracy and repeatability. The flagship version (OSE-260-06) also features a cuvette detection mode, suitable for measuring samples with low concentrations, high volatility, or low surface tension that do not easily form a liquid column. It can also be used for measuring bacterial concentrations and analyzing enzyme kinetics.

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• 5 months ago - by Anonymous

Device to systematically deprive mice/rats of sleep for a certain period each day. Uses feedback control by monitoring animal activity levels. It can activate the deprivation lever after the animal enters a specific sleep stage to deprive or break sleep. It has three working modes: feedback adjustment (software control mode), programmable adjustment (external control mode), and independent touch screen adjustment (standard mode). It can be used to create animal models of sleep deprivation or sleep breaking, and features precise adjustment and low physical exertion.

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• 5 months ago - by Anonymous

Federal Statistical Research Data Centers (FSRDCs) are secure, specialized facilities operated by the U.S. Census Bureau in partnership with leading research institutions across the U.S.. They provide authorized researchers access to restricted-use, non-public microdata from federal agencies for statistical purposes while ensuring strict confidentiality and data protection. There are more than 30 FSRDC sites located throughout the United States. Researchers can access detailed, non-public data from the Census Bureau, Bureau of Labor Statistics, National Center for Health Statistics, and other agencies. Using FSRDC location to access NCHS restricted data involves additional requirements and costs. If you access National Center for Health Statistics (NCHS) data through FSRDC site, you will interact with both your assigned NCHS RDC analyst and the location's FSRDC administrator over the course of your project. Each of these people have their own roles and responsibilities.

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• 5 months ago - by Anonymous

Secure facility that provides qualified researchers with access to restricted-use, non-public health data. It protects participant confidentiality while allowing analysis of detailed survey data, such as specific geographic locations or sensitive health info. Provides access to restricted data from the National Center for Health Statistics and from other federal government agency surveys and studies. Access is granted only to approved researchers under strict supervision, and all results undergo disclosure review before leaving the RDC.

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• 5 months ago - by Anonymous

Portal provides detailed, non-public data on cancer incidence, such as precise county-level data, specific site factors, and prognostic measures. The restricted access U.S. Cancer Statistics (USCS) dataset provides researchers access to cancer incidence and population data for all 50 states, the District of Columbia, and Puerto Rico. These statistics combine cancer registry data from CDC's National Program of Cancer Registries and the National Cancer Institute's Surveillance, Epidemiology, and End Results program.

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• 5 months ago - by Anonymous

Software R package to create tables displaying results of univariate analyses, stratified or not by categorical variable groupings.

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• 5 months ago - by Anonymous

Software data analysis pipeline for spatial transcriptomics data tailored to polyploid organisms.

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• 5 months ago - submitted by Pedro Cristovão Carvalho

Software package to provide interface for the most frequent tasks of survival analysis, with focus on the needs of clinical oncology. The syntax follows the tidyverse philosophy and is made to be used in a pipeline.

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• 5 months ago - by Anonymous

High-performance Field Emission Scanning Electron Microscope (FE-SEM) designed for ultra-high-resolution imaging and elemental analysis of nanostructures, semiconductor devices, and beam-sensitive materials. It features cold field emission technology for superior, low-voltage, high-resolution imaging (approx. 1.1 nm at 1kV).

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• 5 months ago - by Anonymous

Software package to discover genes that coordinate their expression across spatially adjacent cells. Used for analysis of spatial transcriptomic data allowing in-depth analyses how genes coordinate their expression in space to perform tissue-level functions. Facilitates analysis and exploration of cross-expression patterns.

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• 5 months ago - submitted by Ameer Sarwar

Core for advanced fluorescence bioimaging. Provides both the infrastructure and expertise necessary for researchers with diverse backgrounds to efficiently perform advanced fluorescence microscopy imaging projects on the molecular, cellular and tissue level. AMBIO services include individual user training and assistance, and if necessary supervised image acquisition and guidance for data analysis.

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• 5 months ago - by Anonymous