Curator Dashboard

Web server is an improved version of IPknot web server, which provides services for predicting RNA secondary structures including wide class of pseudoknots. Can perform RNA secondary structure prediction including pseudoknots for very long sequences. Can predict consensus secondary structure when multiple alignment of RNA sequences is given.

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• RRID
• 4 years ago - submitted by Chong Han Ng

Provides advanced light microscopy imaging modalities and histological services. Offers training and application support in experimental design, sample preparation, data generation and analysis through to scientific publication and grant assistance.

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• RRID
• 4 years ago - by Anonymous

Software R package that helps format Seurat objects into objects that can be used for trajectory analysis in other packages such as Monocle

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• RRID
• 4 years ago - by Anonymous

TRUSST is reference database of human transcriptional regulatory interactions.TRRUST v2 is manually curated expanded reference database of human and mouse transcriptional regulatory interactions.

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• RRID
• 4 years ago - by Anonymous

Complexity Analysis Viral Sequences

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• SciCrunch
• 4 years ago - submitted by Jorge da Silva

Software tool for complexity analysis viral sequences.

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• SciCrunch
• 4 years ago - submitted by Jorge da Silva

Software library that enables use of structure based SMOG models of biopolymers with OpenMM.

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• RRID
• 4 years ago - by Anonymous

Software tool for analysis, visualization and animation of ribosome structures. Plugin for use with VMD that can automate download, structure alignment, analysis, visualization and animation of ribosome structures.

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• RRID
• 4 years ago - by Anonymous

Software tool interprets Verilog descriptions of programmable hardware and transforms these into combinations of small look-up tables as provided on FPGAs from Xilinx or Lattice.

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• SciCrunch
• 4 years ago - by Anonymous

Software Python scripts to plot neuroimaging results especially functional connectivity results.

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• RRID
• 4 years ago - submitted by Stephen Karl Larroque

Core complements services provided by BRC Genomics Facility.Working on collaborative model, protocol and method development by early adopters pave the way for larger scale production services.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software to control automated microscopes and microscope equipment in combination with multidimensional acquisition and analysis. Used for high speed image acquisition and processing.

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• RRID
• 4 years ago - by Anonymous

Software tools for analyzing and quantifying effects of confounder variables on machine learning model predictions.

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• SciCrunch
• 4 years ago - by Anonymous

Software pipeline for assembly and analysis of highly heterozygous genomes. Used for diagnosis of hybrids, aneuploids, and other non standard architectures in genome assemblies.

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• SciCrunch
• 4 years ago - submitted by gabaldonlab Comparative Genomics

Software tool for marking ant motion trajectories dataset from video. Provided marking software, three data quality analysis scripts, and tracking performance evaluation tool.

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• SciCrunch
• 4 years ago - submitted by Xiaoyan Cao

Core at Miami Project to Cure Paralysis leverages PerkinElmer Opera Phenix Plus high content screening system to provide assay development and phenotypic screening. Facility is also equipped with PerkinElmer Janus G3 liquid handler, featuring modular and variable dispense heads, to automate screening workflows and enhance throughput. Core supports phenotypic and target-based assays. Phenotypic assays range from 2D to 3D, widefield to confocal, and antibody to dye based. It collaborates with users to develop customized assays and analytical pipelines tailored to their specific needs. Current specializations include neurite tracing, lipid droplet quantification, cell viability, morphological and kinetic analyses, phagocytosis, cell marker detection, cell adhesion, among others.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software metagenomics annotations pipeline that regularly enrich up-to-date ENA and MGnify metagenomics studies with metadata extracted from research articles in EuropePMC.

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• SciCrunch
• 4 years ago - submitted by Maaly Nassar

Software package includes new cell reference for adult peripheral blood deconvolution arrayed using Illumina HumanMethylationEPIC.Optimized library for reference based deconvolution of whole blood biospecimens assayed using Illumina HumanMethylationEPIC BeadArray.

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• SciCrunch
• 4 years ago - by Anonymous

Open Source portable FPGA place and route tool.

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• SciCrunch
• 4 years ago - by Anonymous

Flow cytometer as novel cell analyzer that leverages inherent benefits of flow cytometry and enables simultaneous measurement of up to 50 different characteristics of single cell.

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• RRID
• 4 years ago - by Anonymous